View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_226 (Length: 287)
Name: NF8981_low_226
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_226 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 270
Target Start/End: Original strand, 39236224 - 39236473
Alignment:
| Q |
21 |
agccctgccgtcagtggcgatataactccttgtcctctcccaactataaaaaggccaaatacatcacccatagaccttatcgccgcgacagtttcctcgc |
120 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39236224 |
agccctgccgtcagcggtgatataactccttgtcctctcccaactataaaaaggccaaatacatcacccatagaccttatcgctgcgacagtttcctcgc |
39236323 |
T |
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| Q |
121 |
cattgtttacaaccttttcaatatatgcaattgaatcatcattcacatggctcattgtgaaccaatgcaaaaacttctcatccatttgcttttcactatc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39236324 |
cattgtttacaaccttttcaatatatgcaattgaatcatcattcacatggctcattgtgaaccaatgcaaaaacttctcatccatttgcttttcactatc |
39236423 |
T |
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| Q |
221 |
ttcttctgtttcaacatctaatactctttgtctatttacattgttatcac |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39236424 |
ttcttctgtttcaacatctaatactctttgtctatttacattgttatcac |
39236473 |
T |
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