View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_23 (Length: 795)
Name: NF8981_low_23
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Original strand, 44975558 - 44976247
Alignment:
| Q |
1 |
cagagatggaccaatgtgtactttttgattgggttctttgttttttaccgtgtgctttgtttcttggttttacttagaagggtttcaagatccaaaactt |
100 |
Q |
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| T |
44975558 |
cagagatggaccaatgtgtactttttgattgggttctttgttttttaccgtgtgctttgtttcttggttttacttagaagggtttcaagatccaaaactt |
44975657 |
T |
|
| Q |
101 |
gaaggcctattggtgaaaaggataagcatataattatgaattttcttcaattctgatccttacttttgtatgaactggttttgttatttcatttgatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44975658 |
gaaggcctattggtgaaaaggataagcatataattatgaattttcttcaattctgatccttacttttgtatgaactggttttgttatttcatttgatttt |
44975757 |
T |
|
| Q |
201 |
ctataaagtgtataaatatcatcatgatctgaaatacatgcatgcagccacaacca--aagtttgtttcaaagtgagaaagaagactctttcttctctcc |
298 |
Q |
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| T |
44975758 |
ctataaagtgtataaatatcatcatgatctgaaatacatgcatgcggccataaacataaagtttgtttcaaagttagaaagttgactctttcttctctcc |
44975857 |
T |
|
| Q |
299 |
tctttggttgtgatgttaaatctcattaattctttatttggaatatatgttgttttggatgatttggtattattatgggatatttcattttcttgagata |
398 |
Q |
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| T |
44975858 |
tctttggttgtgatgttaaatctcattaattctttatttggaatatatgttgttttggatgatttggtattattatgggatatttcattttcttgagata |
44975957 |
T |
|
| Q |
399 |
caagtggataagcagtacttaagactacgacgtctcatattttatcactatatgaatgaatctacgatagacatgcattataatgaaaaggtacacagta |
498 |
Q |
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| T |
44975958 |
caagtggataagcagtacttaagactacgacgtctcatattttatcactatatgaatgaatctacgatagaaatgcattataatgaaaaggtacacagta |
44976057 |
T |
|
| Q |
499 |
cttactaatcttattcatttgtgaacctacctactaataaatctaatattaaaacttctaattcaaaagagataattgtgatattaatttatagctggta |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44976058 |
cttactaatcttattcatttgtgaacctacctactaataaatctaatattaaaacttctaattaaaaagagataattgtgatattaatttatagctggta |
44976157 |
T |
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| Q |
599 |
taaaaactttgttgatggatattatattatgtaagtagctctataagcaacactatgaaccttgaggtttttcctttagatgagattaaactcac |
693 |
Q |
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| T |
44976158 |
taaaaactttgttgatgg-----atattatgtaagtagctctataagcaacactatgaaccttgaggtttttcctttagatgagattaaactcac |
44976247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 694 - 777
Target Start/End: Original strand, 44976294 - 44976377
Alignment:
| Q |
694 |
gccaggagtaggaggatcagtaaggtaggctccatttgattattgtgaactgatttggagggtttggtgggtgaaagtatatac |
777 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44976294 |
gccaggagtaggagggtcagtaaggtaggctccatttgattattgtgaactgatttggagggtttggtgggtgaaagtatatac |
44976377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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