View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_232 (Length: 283)
Name: NF8981_low_232
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_232 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 35399532 - 35399268
Alignment:
| Q |
19 |
gcagctaactgaaatcatgaaatagtttttctttgagtaaaagtgannnnnnngaaaagaattgtattatgtgtatgcgcgtgtgtggaatttgacaaat |
118 |
Q |
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| T |
35399532 |
gcagctaactgaaatcatgaaatagtttttctttgagtaaaagtgatttttttgaaaagaattgtattatgtgtatgcgcgtgtgtgaaatttgacaaat |
35399433 |
T |
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| Q |
119 |
tataagaaacattcatttaactatgacgaagctagctagcatgaagattaaattcaatgtcactatgcattacattaggtgtat--------gcgcgtgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
35399432 |
tataagaaacattcatttaactatgacgaagctagctagcatgaagattaaattcaatgtcactatgcattacattaggtgtatccggagaagcccaaaa |
35399333 |
T |
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| Q |
211 |
gtttc-aatttattggaaaaaattgaaacaacgcattagagtatatcaagctaaacaccaaactc |
274 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35399332 |
gtgtctggtttattggaaaaaattgaaacaacgcattagagtatatcaagctaaacacctaactc |
35399268 |
T |
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