View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_242 (Length: 269)
Name: NF8981_low_242
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_242 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 11859002 - 11858758
Alignment:
| Q |
11 |
gtgttcagattaatggaaacacagtcactgcaattcaaattgcaggtctgaatattcaaggttctttaccaaaagaattggtgcaactcactcagttaac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11859002 |
gtgttcagattaatggaaacacagtcactgcaattcaaattgcaggtctgaatattcaaggttctttaccaaaagaattggtgcaactcactcagttaaa |
11858903 |
T |
|
| Q |
111 |
tcgttttgagtgcaatggaaacgctttatctggtgattttccttacatgcaaacttcacttcagtttttgtatattaacaacaacaatttcacttccatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11858902 |
tcgttttgagtgcaatggaaacgctttatctggtgattttccttacatgccaagttcacttcagtttttgtatattaacaacaacaatttcacttccatg |
11858803 |
T |
|
| Q |
211 |
ccaagtgatttcttcaccaacatgagtaatttgatagaggtgagt |
255 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11858802 |
ccaagtgatttcttcacaaacatgagtaatttgatagaggtgagt |
11858758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 255
Target Start/End: Original strand, 11834785 - 11835006
Alignment:
| Q |
34 |
gtcactgcaattcaaattgcaggtctgaatattcaaggttctttaccaaaagaattggtgcaactcactcagttaactcgttttgagtgcaatggaaacg |
133 |
Q |
| |
|
|||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
11834785 |
gtcactgcaattcaaattgcagatacaaacattcaaggttctttaccaaaagaattgatgcaactcactgagttaactcggtttgaatgcaatggaaaca |
11834884 |
T |
|
| Q |
134 |
ctttatctggtgattttccttacatgcaaacttcacttcagtttttgtatattaacaacaacaatttcacttccatgccaagtgatttcttcaccaacat |
233 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||| ||||| |||| |||||||||||| |||| ||||| |||||||||||| ||||||| |
|
|
| T |
11834885 |
gtttatctggtgattttccttacatgccaatttcacttcagcatttgtctattggtaacaacaatttcgcttcgatgccgagtgatttcttcgccaacat |
11834984 |
T |
|
| Q |
234 |
gagtaatttgatagaggtgagt |
255 |
Q |
| |
|
|||||||||||| || |||||| |
|
|
| T |
11834985 |
gagtaatttgattgatgtgagt |
11835006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 61 - 252
Target Start/End: Original strand, 11848198 - 11848389
Alignment:
| Q |
61 |
aatattcaaggttctttaccaaaagaattggtgcaactcactcagttaactcgttttgagtgcaatggaaacgctttatctggtgattttccttacatgc |
160 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||| || ||| | || ||||| | |||||| ||||||| |
|
|
| T |
11848198 |
aatattcaaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttttctggaggttttccatacatgc |
11848297 |
T |
|
| Q |
161 |
aaacttcacttcagtttttgtatattaacaacaacaatttcacttccatgccaagtgatttcttcaccaacatgagtaatttgatagaggtg |
252 |
Q |
| |
|
|| |||||||||| |||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11848298 |
caaattcacttcagaacttgtatatcagaaacaacagtttcacttccatgcctagtgatttcttcaccaacatgagtaatttgatagaggtg |
11848389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University