View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_243 (Length: 268)
Name: NF8981_low_243
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_243 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 4031566 - 4031818
Alignment:
| Q |
1 |
catttaagtcattcatagtcaaataaccgacatttgaacttcaacgatatttctcataagtgtgcgtctttcactcacatcacctttgcacttcaattat |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4031566 |
catttaactcattcatagtcaaataaccgacatttgaacttcaaccatatttctcataagtgtgcgtctttaactcacatcacctttgcacttcaattat |
4031665 |
T |
|
| Q |
101 |
caatcagtggaacatattgtctcccacatcagtataggtttattgtcaatccccatcaagccgaaccatgacttcgatacatttgttagggtgattggtg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031666 |
caatcaatggaacatattgtctcccacatcagtataggtttattgtcaatccccatcaagccgaaccatgacttcgatacatttgttagggtgattggtg |
4031765 |
T |
|
| Q |
201 |
aagcatcgagagcggcaatgaactaaaaataaggaccaccaagagaccttgat |
253 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4031766 |
tagcatcgagagcagcaatgaactaaaaataaggaccaccaagagaccttgat |
4031818 |
T |
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