View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_248 (Length: 259)
Name: NF8981_low_248
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_248 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 140 - 255
Target Start/End: Complemental strand, 44953380 - 44953265
Alignment:
| Q |
140 |
taggaaaaagatacatgtacaccccaatgtacaccctccatgtggcatggctatttttgtaattttacccttttctatctcttagatctccctttcttct |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44953380 |
taggaaaaagatacatgtacaccccaatgtacaccctccatgtggcatgattatttttgtaattttacccttttctatctcttagatctccctttcttct |
44953281 |
T |
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| Q |
240 |
cccttccttctctctc |
255 |
Q |
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|||||||||||||||| |
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| T |
44953280 |
cccttccttctctctc |
44953265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 34332379 - 34332273
Alignment:
| Q |
153 |
catgtacaccccaatgtacaccctccatgtggcatggctatttttgtaattttacccttttctatctcttagatctccctttcttctcccttccttctct |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34332379 |
catgtacaccccaatgtacaccctccatgtggcatggctatttttgtaattttacccttttctatctcttagatctccctttcttctcccttccttctct |
34332280 |
T |
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| Q |
253 |
ctcactc |
259 |
Q |
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||||||| |
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| T |
34332279 |
ctcactc |
34332273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 562251 - 562288
Alignment:
| Q |
206 |
acccttttctatctcttagatctccctttcttctccct |
243 |
Q |
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| T |
562251 |
accctcttctctctcttagatctccctttcttctccct |
562288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 38620694 - 38620744
Alignment:
| Q |
153 |
catgtacaccccaatgtacaccctccatgtggcatggctatttttgtaattt |
204 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |
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| T |
38620694 |
catgtacaccccaatgtacaccct-catgtggcaaggctattttggtaattt |
38620744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 33846215 - 33846252
Alignment:
| Q |
206 |
acccttttctatctcttagatctccctttcttctccct |
243 |
Q |
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||||| |||| ||||||||||||||||||||||||||| |
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| T |
33846215 |
accctcttctctctcttagatctccctttcttctccct |
33846252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 33847163 - 33847126
Alignment:
| Q |
206 |
acccttttctatctcttagatctccctttcttctccct |
243 |
Q |
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||||| |||| ||||||||||||||||||||||||||| |
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| T |
33847163 |
accctcttctctctcttagatctccctttcttctccct |
33847126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 11893807 - 11893844
Alignment:
| Q |
206 |
acccttttctatctcttagatctccctttcttctccct |
243 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||| |
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| T |
11893807 |
accctcttctctctcttagatctccctttcttctccct |
11893844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 28086259 - 28086222
Alignment:
| Q |
206 |
acccttttctatctcttagatctccctttcttctccct |
243 |
Q |
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||||| |||| ||||||||||||||||||||||||||| |
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| T |
28086259 |
accctcttctctctcttagatctccctttcttctccct |
28086222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 10040334 - 10040297
Alignment:
| Q |
206 |
acccttttctatctcttagatctccctttcttctccct |
243 |
Q |
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||||| |||| ||||||||||||||||||||||||||| |
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| T |
10040334 |
accctcttctctctcttagatctccctttcttctccct |
10040297 |
T |
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