View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_253 (Length: 254)
Name: NF8981_low_253
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_253 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 35911032 - 35910814
Alignment:
| Q |
18 |
taacccttacactcttacaactatgagtcataaaaacaaataagtaagctctcagttttactagtcgagagtctatgtaagctcaacaagtttacttagt |
117 |
Q |
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| T |
35911032 |
taacccttacactcttacaactatgagtcataaaaacaaataagtaagctctcagttttactagtcgagagtctatgtaagctcaacaagtttacttagt |
35910933 |
T |
|
| Q |
118 |
cgagattatgacagctttgattctgacaacataatgtttgaaactcacaggacctggctgttcctcactggggtatggagcctttcaggagctaggaccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35910932 |
cgagattatgacagctttgattctgacaacataatgtttgaaactcacaggacctggctgttcctcactggggtatggagcctttcaggagctaggaccc |
35910833 |
T |
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| Q |
218 |
ttcagaatcaactctgatg |
236 |
Q |
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||||||||||||||||||| |
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| T |
35910832 |
ttcagaatcaactctgatg |
35910814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 35928316 - 35928206
Alignment:
| Q |
126 |
tgacagctttgattctgacaacataatgtttgaaactcacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaat |
225 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928316 |
tgacagctttgattctgacaacataatgtttgaaacttacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaat |
35928217 |
T |
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| Q |
226 |
caactctgatg |
236 |
Q |
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||||||||||| |
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| T |
35928216 |
caactctgatg |
35928206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 35921707 - 35921612
Alignment:
| Q |
141 |
tgacaacataatgtttgaaactcacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaatcaactctgatg |
236 |
Q |
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| T |
35921707 |
tgacatcataatgtttgaaactcacaggacctggttgttcctcactgggatatggagcctttgaggagctcggacccttcagagtcaactctgatg |
35921612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 35935125 - 35935022
Alignment:
| Q |
133 |
tttgattctgacaacataatgtttgaaactcacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaatcaactct |
232 |
Q |
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|||||| |||| |||||||| |||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
35935125 |
tttgatgctgataacataatatttgaaacacacaggacctggctgttcttcacttgggtatggagcctttgaggagctaggacccttcagagtcaactct |
35935026 |
T |
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| Q |
233 |
gatg |
236 |
Q |
| |
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|||| |
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| T |
35935025 |
gatg |
35935022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 35915347 - 35915241
Alignment:
| Q |
130 |
agctttgattctgacaacataatgtttgaaactcacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaatcaac |
229 |
Q |
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||||| |||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||| |||| |
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| T |
35915347 |
agcttcgattttgacaacataatgtttgaaactcgcaggacctggttgttcctcactgggatatggagcctttcaagagctcggacccttcagagtcaat |
35915248 |
T |
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| Q |
230 |
tctgatg |
236 |
Q |
| |
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||||||| |
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| T |
35915247 |
tctgatg |
35915241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 35940685 - 35940591
Alignment:
| Q |
142 |
gacaacataatgtttgaaactcacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaatcaactctgatg |
236 |
Q |
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|||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
35940685 |
gacaacataatgtttgaaccacacaggacctggctgttcttcacttgggtatggagcctttcaggagctcggacccttcagagtcaactctgatg |
35940591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 35915523 - 35915483
Alignment:
| Q |
18 |
taacccttacactcttacaactatgagtcataaaaacaaat |
58 |
Q |
| |
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||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
35915523 |
taacccttacagtcttacaattatgagtcttaaaaacaaat |
35915483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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