View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_258 (Length: 253)

Name: NF8981_low_258
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_258
NF8981_low_258
[»] chr3 (21 HSPs)
chr3 (12-238)||(7031090-7031316)
chr3 (8-237)||(12342294-12342523)
chr3 (8-237)||(29523814-29524043)
chr3 (8-238)||(11203660-11203890)
chr3 (8-233)||(33496393-33496618)
chr3 (8-237)||(36801144-36801373)
chr3 (8-237)||(35214440-35214669)
chr3 (102-220)||(48570202-48570320)
chr3 (126-237)||(11310382-11310493)
chr3 (1-222)||(40930590-40930811)
chr3 (1-196)||(19920291-19920486)
chr3 (1-222)||(34332877-34333098)
chr3 (8-237)||(19890520-19890749)
chr3 (2-190)||(2364166-2364354)
chr3 (2-190)||(10323634-10323822)
chr3 (2-68)||(7312787-7312853)
chr3 (116-222)||(26771166-26771272)
chr3 (135-202)||(963359-963426)
chr3 (138-204)||(3140727-3140793)
chr3 (2-64)||(48570102-48570164)
chr3 (1-54)||(7032343-7032396)
[»] chr8 (21 HSPs)
chr8 (8-238)||(20824137-20824367)
chr8 (8-237)||(37433974-37434203)
chr8 (8-237)||(17699324-17699553)
chr8 (8-237)||(2170182-2170413)
chr8 (8-237)||(43270292-43270521)
chr8 (7-237)||(2529728-2529958)
chr8 (1-209)||(13199993-13200201)
chr8 (102-223)||(13879650-13879771)
chr8 (101-237)||(42177727-42177863)
chr8 (102-223)||(25090243-25090364)
chr8 (1-222)||(13396245-13396466)
chr8 (1-223)||(32266420-32266642)
chr8 (114-222)||(5181527-5181635)
chr8 (166-211)||(37434524-37434569)
chr8 (2-190)||(7924275-7924463)
chr8 (2-68)||(8299814-8299880)
chr8 (1-222)||(9922458-9922679)
chr8 (2-67)||(25090399-25090464)
chr8 (113-198)||(41665543-41665628)
chr8 (2-68)||(13879550-13879616)
chr8 (1-69)||(172113-172181)
[»] chr6 (16 HSPs)
chr6 (8-238)||(17579150-17579380)
chr6 (8-238)||(17573724-17573954)
chr6 (8-238)||(17606403-17606633)
chr6 (8-237)||(21630176-21630407)
chr6 (8-187)||(10577318-10577497)
chr6 (8-234)||(20883102-20883328)
chr6 (8-237)||(11462255-11462483)
chr6 (173-238)||(14513791-14513856)
chr6 (1-222)||(2553494-2553715)
chr6 (1-222)||(12733982-12734203)
chr6 (1-68)||(18651296-18651363)
chr6 (125-222)||(24767610-24767707)
chr6 (116-213)||(15958990-15959088)
chr6 (116-222)||(21168082-21168188)
chr6 (118-191)||(14373170-14373243)
chr6 (135-204)||(17330837-17330906)
[»] chr1 (10 HSPs)
chr1 (8-238)||(16917878-16918108)
chr1 (8-238)||(43388208-43388438)
chr1 (8-237)||(37191279-37191508)
chr1 (102-223)||(51993891-51994012)
chr1 (1-196)||(51052363-51052558)
chr1 (2-68)||(6050614-6050680)
chr1 (138-222)||(6259674-6259758)
chr1 (2-54)||(47623140-47623192)
chr1 (1-68)||(11909167-11909234)
chr1 (2-68)||(35541060-35541126)
[»] chr5 (24 HSPs)
chr5 (8-238)||(8300251-8300481)
chr5 (8-238)||(25857493-25857723)
chr5 (8-237)||(27766885-27767113)
chr5 (8-237)||(33385443-33385672)
chr5 (8-181)||(10776662-10776835)
chr5 (8-237)||(18359161-18359388)
chr5 (104-223)||(27795339-27795458)
chr5 (98-222)||(19255282-19255406)
chr5 (1-198)||(23238265-23238462)
chr5 (1-68)||(28535737-28535804)
chr5 (183-237)||(10774293-10774347)
chr5 (135-204)||(33169533-33169602)
chr5 (1-196)||(12825082-12825277)
chr5 (113-204)||(18089935-18090026)
chr5 (2-68)||(42513731-42513797)
chr5 (1-68)||(8228037-8228104)
chr5 (1-68)||(30732376-30732443)
chr5 (1-68)||(35983853-35983920)
chr5 (116-222)||(28535852-28535958)
chr5 (128-222)||(35983980-35984074)
chr5 (3-68)||(19255186-19255251)
chr5 (137-222)||(26072749-26072834)
chr5 (125-222)||(42927988-42928085)
chr5 (1-69)||(27117223-27117291)
[»] chr4 (24 HSPs)
chr4 (8-238)||(12697654-12697884)
chr4 (8-237)||(8360942-8361171)
chr4 (62-237)||(4548342-4548517)
chr4 (8-237)||(20002560-20002796)
chr4 (102-223)||(54483322-54483443)
chr4 (102-223)||(48311951-48312072)
chr4 (173-237)||(55725827-55725891)
chr4 (110-221)||(2822208-2822319)
chr4 (1-222)||(1828602-1828823)
chr4 (1-222)||(47685957-47686178)
chr4 (2-190)||(13270954-13271142)
chr4 (1-68)||(55725748-55725815)
chr4 (116-222)||(15740078-15740184)
chr4 (125-222)||(7403770-7403867)
chr4 (2-190)||(23642654-23642842)
chr4 (2-190)||(47418693-47418881)
chr4 (2-64)||(2822100-2822162)
chr4 (8-54)||(45472778-45472824)
chr4 (125-180)||(11587384-11587439)
chr4 (113-204)||(19740214-19740305)
chr4 (1-68)||(19755278-19755345)
chr4 (1-68)||(19784461-19784528)
chr4 (135-204)||(46145550-46145619)
chr4 (6-58)||(7403934-7403986)
[»] chr2 (12 HSPs)
chr2 (8-237)||(14439595-14439823)
chr2 (8-237)||(11000020-11000248)
chr2 (3-237)||(12645378-12645612)
chr2 (102-223)||(33515947-33516068)
chr2 (102-223)||(40176525-40176646)
chr2 (1-222)||(15917511-15917732)
chr2 (116-237)||(38604551-38604672)
chr2 (1-198)||(41206897-41207094)
chr2 (127-220)||(28252579-28252672)
chr2 (2-54)||(28252745-28252797)
chr2 (2-58)||(40176689-40176745)
chr2 (1-68)||(4552180-4552247)
[»] chr7 (11 HSPs)
chr7 (8-237)||(37254600-37254829)
chr7 (8-237)||(25619301-25619530)
chr7 (8-139)||(18532568-18532699)
chr7 (135-237)||(18530352-18530454)
chr7 (116-222)||(37919401-37919507)
chr7 (125-222)||(235625-235722)
chr7 (2-190)||(4938191-4938379)
chr7 (1-157)||(11277314-11277470)
chr7 (1-68)||(17720646-17720713)
chr7 (113-198)||(29967856-29967941)
chr7 (4-54)||(235502-235552)
[»] scaffold0034 (1 HSPs)
scaffold0034 (2-190)||(105906-106094)
[»] scaffold0369 (1 HSPs)
scaffold0369 (1-222)||(11267-11488)
[»] scaffold0472 (2 HSPs)
scaffold0472 (1-54)||(3277-3330)
scaffold0472 (113-157)||(3174-3218)
[»] scaffold0161 (1 HSPs)
scaffold0161 (8-56)||(6078-6126)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 7031090 - 7031316
Alignment:
Q  12 tttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtgtaac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7031090 tttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtgtaac 7031189  T
Q  112 gggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7031190 gggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggg 7031289  T
Q  212 gtcgattctcatactatgtcagatcac 238  Q
    |||||||||||||||||||||||||||    
T  7031290 gtcgattctcatactatgtcagatcac 7031316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 12342294 - 12342523
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||| |||||| ||||||||||||| ||||||||||    
T  12342294 aaagtttctatccttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtggaacgtgggattatagctgtggaaaatcggttttgtg 12342393  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||||||| ||||||||||||||||||||||||||||| || |||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||    
T  12342394 taacgggatgcgggcaggttgaagatgtgaatcatttattcttctcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcga 12342493  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    || |||||||||||||||||| ||||||||    
T  12342494 agaggtcgattctcatactatctcagatca 12342523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 29523814 - 29524043
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||    
T  29523814 aaagtttctatccttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtggcacgtgggattatagctgtggaaaatcggttttgtg 29523913  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    ||||||||||  |||||||| ||||||||||||||||||| ||||||||||| | ||||||||| ||||||||| ||||| |||||||||||||||||||    
T  29523914 taacgggatgcaggcaggttaaagatgtgaatcatttattcttgtcttgtccaatttttggtgcattgtggcctttggtgtgggcttggcttggtgtcga 29524013  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    ||||||||||||||||| ||| ||||||||    
T  29524014 aggggtcgattctcataatatctcagatca 29524043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 11203890 - 11203660
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||| |||||| ||||||||||||| ||||||||||    
T  11203890 aaagtttctatacttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtggaacgtgggattatagctgtggaaaatcggttttgtg 11203791  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||| |||||||||||||||||||||||||    
T  11203790 taacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggttcattgtggcctttggtgcgggcttggcttggtgtcga 11203691  T
Q  208 aggggtcgattctcatactatgtcagatcac 238  Q
     ||||| |||||| |||| || |||||||||    
T  11203690 cggggttgattctaataccatctcagatcac 11203660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 33496618 - 33496393
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||| ||| |||||| || |||||||||| ||||||||||    
T  33496618 aaagtttctatcattgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtggaacgtgggattatatctgtggaaaatcggttttgtg 33496519  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    ||| |||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||    
T  33496518 taatgggatgcggacaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcga 33496419  T
Q  208 aggggtcgattctcatactatgtcag 233  Q
    |||||| ||||||||| |||| ||||    
T  33496418 aggggtagattctcatgctatctcag 33496393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 36801144 - 36801373
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||| ||||||||||||||  ||| |||||||||| |||||||||||||| |||||||||||| | | |||| || |||||||||| ||||||||||    
T  36801144 aaagtttatatccttgcttggcaactgctgagggatcgtttacctactaaatcaaatttggtggcatgtgagattatatctgtggaaaatcggttttgtg 36801243  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||    
T  36801244 tatcgggatgtgggcaggttgaagatgtaaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcga 36801343  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    |||||| ||||||||| |||| ||||||||    
T  36801344 aggggtagattctcatgctatctcagatca 36801373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 35214440 - 35214669
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||||||||||| ||||||  ||||||||||||| || ||||||||||| ||||||   | ||| |||||| ||  |||||||   | ||||||||    
T  35214440 aaagtttctatccttgtttggcggatgttgagggatcgtttgcctactaaatcaaatttgccagaacgtgggattctatatgtggaagctcagttttgtg 35214539  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    ||||||||||| |||| |||||||||||||||||||| || ||||||||||| | ||||||||| ||||||||| |||||||||| ||||||||||||||    
T  35214540 taacgggatgttggcatgttgaagatgtgaatcatttgttcttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcatggcttggtgtcga 35214639  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    |||||| ||||||||| |||| ||| ||||    
T  35214640 aggggtagattctcatgctatctcatatca 35214669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 48570202 - 48570320
Alignment:
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttgg 201  Q
    ||||||| |||||||||||||| ||||||||||||  |||| | |||||| |||||||    || |||||||| |||||| |||||||||||||||||||    
T  48570202 tttgtgtcacgggatgtgggcatgttgaagatgtgtctcatatgtttttgacttgtcctttcttcggtgctttatggcctatggtgcgggcttggcttgg 48570301  T
Q  202 tgtcgaaggggtcgattct 220  Q
    |||||||||||| ||||||    
T  48570302 tgtcgaaggggtagattct 48570320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 11310382 - 11310493
Alignment:
Q  126 ttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatac 225  Q
    |||||||||||| |||||| ||||||||||| || | |||||| ||  |||||||| |||||| |||||||||||||||||||||||| ||||||| | |    
T  11310382 ttgaagatgtgactcatttgtttttgtcttgcccaaattttggcgcactgtggcctatggtgcaggcttggcttggtgtcgaaggggtagattctcttgc 11310481  T
Q  226 tatgtcagatca 237  Q
    ||| ||||||||    
T  11310482 tatttcagatca 11310493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40930590 - 40930811
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||| || ||||||||| | |||||||| |||  ||||||||     || ||  ||||| || ||||    |||    
T  40930590 tcctctcaaagtatctatccttgcttggcgacttttgagggattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcgg 40930689  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    || |||||  | || |||||| | || |||||||| |||||||| |||||||||||| | |||||| |||| || |||||  |||||||||| |||||||    
T  40930690 ttgtgtgtttctggttgtgggaacgtcgaagatgtcaatcatttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcgggcatggcttg 40930789  T
Q  201 gtgtcgaaggggtcgattctca 222  Q
    | || | ||||||||| |||||    
T  40930790 gagtggtaggggtcgactctca 40930811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 19920291 - 19920486
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  |||||||||    ||||| ||| || |||||||  | |||    
T  19920291 tcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcgg 19920390  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttgg 196  Q
    || |||||  | ||||||||| | || |||||||    |||||| ||||||||||||   ||||||||||| || |||||  ||||||||| ||||    
T  19920391 ttatgtgtttctggatgtgggaatgtcgaagatgcttctcatttgtttttgtcttgtgtaacttttggtgcattatggccgatggtgcgggattgg 19920486  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34332877 - 34333098
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||  ||  |||| ||||| |||||||| |||  ||||||||     || || |||||| || ||||    |||    
T  34332877 tcctctcaaagtatctatccttgcttggcaacttctgagagatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcgg 34332976  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    || |||||  | ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| |||| || |||||  |||||||||| ||||| |    
T  34332977 ttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctag 34333076  T
Q  201 gtgtcgaaggggtcgattctca 222  Q
    | || | ||||||||| |||||    
T  34333077 gagtggtaggggtcgactctca 34333098  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 19890749 - 19890520
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||| |||||||| | |||  ||||||||||||| |||||||||||||| || ||||  |  || || |||  |  ||||||  | ||  |||| |    
T  19890749 aaagtttccatccttgcattgcggttgttgagggatcgattacctactaaatccaacttggcagatcgtggcattacatttgtggaggatcgaatttgcg 19890650  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    | || ||||||||||| |||||||||  || |||| | |||||||||||||| | ||| ||||| |||| | || |||||| | | ||| ||||||||||    
T  19890649 tcacaggatgtgggcatgttgaagatacgactcatatgtttttgtcttgtccaattttcggtgcattgttgtctatggtgcagacatgggttggtgtcga 19890550  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
     ||||| ||||||| | |||| ||||||||    
T  19890549 gggggtagattctcttgctatctcagatca 19890520  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 2364354 - 2364166
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggt 101  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||     || || ||| || |||||||  | ||||    
T  2364354 cctctcaaagtatctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggt 2364255  T
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgg 190  Q
    | || ||  | |||||||||   || |||||||| | |||||| |||||||||||| | ||||||||||| || |||||  ||||||||    
T  2364254 tatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgg 2364166  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 10323634 - 10323822
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggt 101  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||   | || || ||| || ||| |||  | ||||    
T  10323634 cctctcaaagtatctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggatgagcggt 10323733  T
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgg 190  Q
    | || ||  | |||||||||   || |||||||| | |||||| |||||||||||| | ||||||||||| || |||||  ||||||||    
T  10323734 tatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgg 10323822  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 7312853 - 7312787
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  7312853 cctctcaaagtatctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttgg 7312787  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 26771166 - 26771272
Alignment:
Q  116 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 215  Q
    |||||||| || |||||||||||||| || ||||||||||| || | |||| |||| || |||||  ||||| |||||||| |||| || |||||||| |    
T  26771166 tgtgggcacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgccttatggccattggtgagggcttggtttggggttgaaggggttg 26771265  T
Q  216 attctca 222  Q
    || ||||    
T  26771266 atcctca 26771272  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 963359 - 963426
Alignment:
Q  135 tgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggt 202  Q
    |||||||| |||||||||||||||||   |||| ||| ||||||||  ||||||| ||||||||||||    
T  963359 tgaatcatctatttttgtcttgtccgtactttgatgcgttgtggccgatggtgcgagcttggcttggt 963426  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 3140793 - 3140727
Alignment:
Q  138 atcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgt 204  Q
    ||||| ||||||||| |||||||   |||||||| ||||||||  ||||||| ||||||||||||||    
T  3140793 atcatctatttttgtattgtccgtactttggtgcgttgtggccgatggtgcgagcttggcttggtgt 3140727  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 48570102 - 48570164
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaat 64  Q
    ||||| ||||||||  ||||||||| |||  ||||||||||||| |||||||||||| |||||    
T  48570102 cctctaaaagtttcagtccttgcttagcggttgttgagggatcgtttacctactaaagctaat 48570164  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7032396 - 7032343
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctac 54  Q
    |||||||||| ||||||||||||| ||||| ||  |||||||||| ||||||||    
T  7032396 tcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctac 7032343  T

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Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 20824367 - 20824137
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20824367 aaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggtggcacgagggattatagctgtggaaaaccggttttgtg 20824268  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20824267 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 20824168  T
Q  208 aggggtcgattctcatactatgtcagatcac 238  Q
    ||||||||||||||||||||| |||||||||    
T  20824167 aggggtcgattctcatactatctcagatcac 20824137  T

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Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 37434203 - 37433974
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||| ||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||| |||||| || |||||||||| ||||||||||    
T  37434203 aaagtctctattcttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtggaacgtgggattatatctgtggaaaatcggttttgtg 37434104  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||| |||||||    
T  37434103 taacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggctttgtgtcga 37434004  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    |||||||||||||||| |||| ||||||||    
T  37434003 aggggtcgattctcatgctatctcagatca 37433974  T

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Target: chr8; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 17699553 - 17699324
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||||| ||| |||||||||||||  |||||| || |||||||||| || |||||||    
T  17699553 aaagtttctatccttgcttggcgactgctgagggatcgtttacctactatatcaaatttggtggcacatgggattatatctgtggaaaatcgattttgtg 17699454  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||| |||||||||||||||||||||||||    
T  17699453 tatcgggatgtaggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtgacctttggtgcgggcttggcttggtgtcga 17699354  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    |||||| ||||||||| |||| ||||||||    
T  17699353 aggggtagattctcatgctatctcagatca 17699324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 2170413 - 2170182
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggt--tttg 105  Q
    ||||||||||||||||||||||| | |||||||||||| |||||||||||||| |||||||| | ||| |||||| || |||||||||| ||||  ||||    
T  2170413 aaagtttctatccttgcttggcgaccgttgagggatcgtttacctactaaatcaaatttggtagaacgtgggattctatctgtggaaaatcggtgttttg 2170314  T
Q  106 tgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtc 205  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||    
T  2170313 tgtaacggggtgtgggcaggttgaagatgtgaatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtc 2170214  T
Q  206 gaaggggtcgattctcatactatgtcagatca 237  Q
    |||||||| ||||||||| |||| ||||||||    
T  2170213 gaaggggtagattctcatgctatctcagatca 2170182  T

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Target: chr8; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 43270521 - 43270292
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||| ||||||| ||||||| |||||| || ||||||||| | |||||||| | ||| | |||| || ||||||||   ||||||||||    
T  43270521 aaagtttctatccttacttggcgactgttgaaggatcgtttgcctactaaaacaaatttggtagaacgtgagattctatctgtggaagctcggttttgtg 43270422  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||| || |||||||||||||||||||||||||    
T  43270421 taacgggttgtgggcaggttgaagatgtgaatcatttgtttttgtcttgtccaatttttggtgcattgtggtctatggtgcgggcttggcttggtgtcga 43270322  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    |||||| ||||||||| |||| ||||||||    
T  43270321 aggggtagattctcatgctatctcagatca 43270292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 2529958 - 2529728
Alignment:
Q  7 caaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgt 106  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||| ||||  |||||||| |  || || ||| ||  | ||||    |||||||||    
T  2529958 caaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattctacttttggaggctcggttttgt 2529859  T
Q  107 gtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcg 206  Q
    || || || |||||||| ||||||||||||| |||||| ||||||||||| || | ||| ||  | ||||||||| ||||||||||||||||||||||||    
T  2529858 gttacagggtgtgggcatgttgaagatgtgactcatttgtttttgtcttgcccaattttcggcacattgtggcctatggtgcgggcttggcttggtgtcg 2529759  T
Q  207 aaggggtcgattctcatactatgtcagatca 237  Q
    |||| || ||||||| | |||| ||||||||    
T  2529758 aaggagtagattctcttgctatttcagatca 2529728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 13200201 - 13199993
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||| |||||||| |||||||||||||  || ||||||||||| |||||||| ||||  |||||||  |  ||  | ||| || || ||||    |||    
T  13200201 tcctctaaaagtttcaatccttgcttggcagctattgagggatcgtttacctacaaaatacaatttggcagagcgcagaattctacctatggaggctcgg 13200102  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    |||||||| || || |||||||| ||||||||||||| |||| | ||||||||||| || | |||||| || ||||||||| ||||||||||||||||||    
T  13200101 ttttgtgttactgggtgtgggcatgttgaagatgtgactcatatgtttttgtcttgcccaatttttggcgcattgtggcctatggtgcgggcttggcttg 13200002  T
Q  201 gtgtcgaag 209  Q
    |||||||||    
T  13200001 gtgtcgaag 13199993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 13879650 - 13879771
Alignment:
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttgg 201  Q
    ||||||| |||||||||||||| ||||||||||||  |||| | ||||||||||||||    |||||||||||||||||| ||||||||| |||||||||    
T  13879650 tttgtgtcacgggatgtgggcatgttgaagatgtgtctcatctgtttttgtcttgtcctttctttggtgctttgtggcctatggtgcgggattggcttgg 13879749  T
Q  202 tgtcgaaggggtcgattctcat 223  Q
    ||| | |||||| |||||||||    
T  13879750 tgtagtaggggtagattctcat 13879771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 42177727 - 42177863
Alignment:
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    |||||||| |||||||||||||| |||||||||||||||||| | ||||| |||||||| | ||| ||| | ||||||||| ||||| | |  |||||||    
T  42177727 ttttgtgtcacgggatgtgggcatgttgaagatgtgaatcatatgtttttctcttgtccaattttcggtacattgtggcctatggtgtgaggatggcttg 42177826  T
Q  201 gtgtcgaaggggtcgattctcatactatgtcagatca 237  Q
    ||||||||||||| |||||||||  ||| ||||||||    
T  42177827 gtgtcgaaggggtagattctcatgttatctcagatca 42177863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 25090364 - 25090243
Alignment:
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttgg 201  Q
    ||||||| | |||||||||||| |||||| |||||  |||||| ||| |||| |||||    || ||||||||||||||| |||||||||||||||||||    
T  25090364 tttgtgtcatgggatgtgggcatgttgaaaatgtgtctcatttgtttctgtcctgtccattcttcggtgctttgtggcctatggtgcgggcttggcttgg 25090265  T
Q  202 tgtcgaaggggtcgattctcat 223  Q
    ||| |||||||| |||||||||    
T  25090264 tgtagaaggggtagattctcat 25090243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13396466 - 13396245
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||| ||  |||| ||||| |||||||| |||  ||||||||     || || |||||| || ||||    |||    
T  13396466 tcctctcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcgg 13396367  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    || |||||  | ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| |||| || |||||  |||||||||| ||||| |    
T  13396366 ttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctag 13396267  T
Q  201 gtgtcgaaggggtcgattctca 222  Q
    | || | ||||||||| |||||    
T  13396266 gagtggtaggggtcgaatctca 13396245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32266642 - 32266420
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||| | || ||||| ||||| |||||||| |||  ||||||||     || || |||||| || ||||    |||    
T  32266642 tcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcgg 32266543  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    || |||||  | ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| |||| ||||||||  ||||||| || ||||| |    
T  32266542 ttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattgtggccaatggtgcgagcatggctag 32266443  T
Q  201 gtgtcgaaggggtcgattctcat 223  Q
    | || |  || ||||||||||||    
T  32266442 gagtggtgggagtcgattctcat 32266420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 5181635 - 5181527
Alignment:
Q  114 gatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggt 213  Q
    |||| ||||| |||||||||| ||||||| | ||||||||||| || ||||||||||| ||||||||  |||||  ||| ||||| ||||| | ||||||    
T  5181635 gatgcgggcaagttgaagatgagaatcatatgtttttgtcttgcccaacttttggtgccttgtggccattggtgtaggcatggctcggtgtggtaggggt 5181536  T
Q  214 cgattctca 222  Q
    ||| |||||    
T  5181535 cgactctca 5181527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 37434569 - 37434524
Alignment:
Q  166 tggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggg 211  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||    
T  37434569 tggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggg 37434524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 7924463 - 7924275
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggt 101  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||     || || ||| || |||||||  | ||||    
T  7924463 cctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggt 7924364  T
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgg 190  Q
    | || ||  | |||||||||   || |||||||| | |||||| |||||||||||| | ||||||||||| || |||||  ||||||||    
T  7924363 tatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgg 7924275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 8299880 - 8299814
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  8299880 cctctcaaagtatctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttgg 8299814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9922679 - 9922458
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||||||||||||||| || || ||  |||||||||| |||||||| |||  ||||||||     || || |||||| || ||||    |||    
T  9922679 tcctctcaaagtttctatccttgcatgacgacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcgg 9922580  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
     | |||||  | || |||||| | || |||||||| |||||||| |||||||||||| | |||||| |||| || |||||  ||||||| || |||||||    
T  9922579 atgtgtgtttctggttgtgggaatgtagaagatgtcaatcatttgtttttgtcttgtgcaacttttagtgccttatggccattggtgcgagcatggcttg 9922480  T
Q  201 gtgtcgaaggggtcgattctca 222  Q
    | || | |||||| || |||||    
T  9922479 gagtggtaggggttgactctca 9922458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 25090464 - 25090399
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttg 67  Q
    ||||| |||||||| ||||||||||||||  |||||||||||||  ||||||||||| | ||||||    
T  25090464 cctctaaaagtttcaatccttgcttggcggttgttgagggatcgactacctactaaagccaatttg 25090399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 41665543 - 41665628
Alignment:
Q  113 ggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggct 198  Q
    ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| |||| || |||||  |||||||||| |||||    
T  41665543 ggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggct 41665628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 13879550 - 13879616
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||||| |  || ||||||||||  ||||||||||||| |||||||||||| | |||||||    
T  13879550 cctctcaaagttacagtctttgcttggcggttgttgagggatcgtttacctactaaagccaatttgg 13879616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 172181 - 172113
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggt 69  Q
    |||||||||||| ||||||||||||||||| ||  ||||||| || ||||| || |||  |||||||||    
T  172181 tcctctcaaagtatctatccttgcttggcgacttctgagggaccggttacccacaaaacttaatttggt 172113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 17579150 - 17579380
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17579150 aaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggtggcacgagggattatagctgtggaaaaccggttttgtg 17579249  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17579250 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgccttgtggcctctggtgcgggcttggcttggtgtcga 17579349  T
Q  208 aggggtcgattctcatactatgtcagatcac 238  Q
    ||||||||||||||||||||| |||||||||    
T  17579350 aggggtcgattctcatactatctcagatcac 17579380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 17573724 - 17573954
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17573724 aaagattctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggtggcacgagggattatagctgtggaaaaccggttttgtg 17573823  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17573824 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgccttgtggcctctggtgcgggcttggcttggtgtcga 17573923  T
Q  208 aggggtcgattctcatactatgtcagatcac 238  Q
    ||||||||||||||||||||| |||||||||    
T  17573924 aggggtcgattctcatactatctcagatcac 17573954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 17606403 - 17606633
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||||||||| |||||||||| ||| || ||| ||||||||||||| || |||||||    
T  17606403 aaagtttctatccttgcttggcgactgttgagggatcatttacctactaaatcaaatttggtggaacgtggaattatagctgtggaaaatcgattttgtg 17606502  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| || |||||||||||||||||||||||||    
T  17606503 taacgggatacgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggtctttggtgcgggcttggcttggtgtcga 17606602  T
Q  208 aggggtcgattctcatactatgtcagatcac 238  Q
    ||||||||||||||||||||| |||||||||    
T  17606603 aggggtcgattctcatactatctcagatcac 17606633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 21630176 - 21630407
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaa--tttggtggcacgagggattttagctgtggaaaaccggttttg 105  Q
    |||||||||||||||| |||||| || ||||||||||| |||||||| ||||| ||  |||||||| ||| |||||| || |||||||||| ||||||||    
T  21630176 aaagtttctatccttgtttggcgactattgagggatcgtttacctacaaaatcaaaaatttggtggaacgtgggattatatctgtggaaaatcggttttg 21630275  T
Q  106 tgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtc 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  21630276 tgtaacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgctttgtggcctttggtgcgggcttggcttggtgtc 21630375  T
Q  206 gaaggggtcgattctcatactatgtcagatca 237  Q
    ||||||||||||||||||||||| ||||||||    
T  21630376 gaaggggtcgattctcatactatttcagatca 21630407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 10577318 - 10577497
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||| |||||| || |||||||||| ||||||||||    
T  10577318 aaagtttatatccttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtggaacgtgggattataactgtggaaaatcggttttgtg 10577417  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtg 187  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||    
T  10577418 taacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtg 10577497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 20883102 - 20883328
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| |||||||||||| | |||||||||||||| || ||||| |  || || ||| || |||||||    ||||||||||    
T  20883102 aaagtttctatccttgcttggcggctgttgagggattgtttacctactaaatcgaacttggtagatcgtggcattatatctgtggaggctcggttttgtg 20883201  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    | |||||||||||||| ||||||||| |||||||| | |||||||||||||| | ||| ||||| ||||||||| |||||||| | ||||||||||||||    
T  20883202 tcacgggatgtgggcatgttgaagatatgaatcatatgtttttgtcttgtccaattttcggtgcattgtggcctatggtgcggacatggcttggtgtcga 20883301  T
Q  208 aggggtcgattctcatactatgtcaga 234  Q
    |||||| ||||||||| |||| |||||    
T  20883302 aggggtagattctcatgctatctcaga 20883328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 11462483 - 11462255
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||| |||||||||||||  |||||||||||||  |||||||||||||| || ||||  |  || || ||| ||  || ||| |  ||||||| ||    
T  11462483 aaagtttcaatccttgcttggcagctgttgagggatcttttacctactaaatccaacttggcagatcgtggcattatatatgcggagactcggttttttg 11462384  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    | |||||||||||||| |||||||||||||||||| | |||||||||||||| | ||| ||||| |||| |||| |||||||||| ||||||||||||||    
T  11462383 tcacgggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgcattgt-gcctatggtgcgggcatggcttggtgtcga 11462285  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    |||||| |||||||||  ||| ||||||||    
T  11462284 aggggtagattctcatgttatctcagatca 11462255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 14513791 - 14513856
Alignment:
Q  173 ttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatgtcagatcac 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14513791 ttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcac 14513856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2553715 - 2553494
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||| || ||||  ||||| |||||||| |||  ||||||||     || || |||||| || ||||    | |    
T  2553715 tcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcag 2553616  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    || |||||  | ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| |||| || || ||  |||||||||| ||||| |    
T  2553615 ttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctag 2553516  T
Q  201 gtgtcgaaggggtcgattctca 222  Q
    | ||   |||||||||||||||    
T  2553515 gagtgataggggtcgattctca 2553494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12734203 - 12733982
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  |||||||||  | || || ||| || || ||||  | |||    
T  12734203 tcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaacccgtggcattctatctctggaggagcgg 12734104  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    || |||||  |  |||||||| | || ||||||||   |||||| |||||||||||| | |||||||| || || |||||  |||||| || |||| | |    
T  12734103 ttatgtgtttctagatgtgggaatgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggagcattatggccgatggtgcaggattggttag 12734004  T
Q  201 gtgtcgaaggggtcgattctca 222  Q
    | || | ||||||||| |||||    
T  12734003 gagtggtaggggtcgactctca 12733982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 18651296 - 18651363
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  18651296 tcctctcaaagtctctatccttgcttggcgacttctgagggatcggttacctacaaaaaataatttgg 18651363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 24767610 - 24767707
Alignment:
Q  125 gttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 222  Q
    ||||||||||| ||| |||| |||||||||||||| |||||| |||| || || ||  |||||||||| ||||| || || | ||||||||| |||||    
T  24767610 gttgaagatgttaataatttgtttttgtcttgtccaacttttagtgccttatgaccattggtgcgggcatggctcggagtggtaggggtcgactctca 24767707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 15958990 - 15959088
Alignment:
Q  116 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcg-ggcttggcttggtgtcgaaggggt 213  Q
    |||||||| || |||||||||||||| || ||||| ||||| || | ||||||||| || |||||  ||||| | |||||||||||| || ||||||||    
T  15958990 tgtgggcacgtggaagatgtgaatcacttgtttttatcttgcccaatttttggtgccttatggccattggtgagaggcttggcttggggttgaaggggt 15959088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 21168188 - 21168082
Alignment:
Q  116 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 215  Q
    |||||| | ||||||||||| |||||| | ||||||||||||   |||||||||||||| |||||  || |||| || ||||| || || |  |||||||    
T  21168188 tgtgggaatgttgaagatgttaatcatatgtttttgtcttgtgtaacttttggtgctttatggccattgatgcgagcatggctaggagtggtgggggtcg 21168089  T
Q  216 attctca 222  Q
    |||||||    
T  21168088 attctca 21168082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 14373170 - 14373243
Alignment:
Q  118 tgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcggg 191  Q
    |||||| | ||||||||| |||||||| ||||||||||||||   ||||||||| || ||| || |||||||||    
T  14373170 tgggcatgatgaagatgtaaatcatttgtttttgtcttgtccattttttggtgccttatggtctttggtgcggg 14373243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 17330906 - 17330837
Alignment:
Q  135 tgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgt 204  Q
    |||||||||| ||||||||||||| |  |||||||||  |||||||| || ||||||| ||||| |||||    
T  17330906 tgaatcatttgtttttgtcttgtcagtattttggtgcgctgtggcctttgatgcgggcatggctcggtgt 17330837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 16917878 - 16918108
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  16917878 aaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggtggcacgagggattatagctgcggaaaaccggttttgtg 16917977  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16917978 taatgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 16918077  T
Q  208 aggggtcgattctcatactatgtcagatcac 238  Q
    |||||||||||||||||||||||||||||||    
T  16918078 aggggtcgattctcatactatgtcagatcac 16918108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 43388438 - 43388208
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||| || ||||||| ||| |||||| ||||||||||||| ||||||||||    
T  43388438 aaagtttctatccttgcttggcgattgttgagggatcgtttacctactaaatcaaaattggtggaacgtgggattatagctgtggaaaatcggttttgtg 43388339  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||    
T  43388338 taacgggatgcaggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcga 43388239  T
Q  208 aggggtcgattctcatactatgtcagatcac 238  Q
    ||||||||||||||||||||| ||| |||||    
T  43388238 aggggtcgattctcatactatctcatatcac 43388208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 37191279 - 37191508
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||| ||||||||||||||| |||||||| ||||| |||||||||||||| || ||||  |  || || |||  | |||||||  | || |||||||    
T  37191279 aaagtttatatccttgcttggcggctgttgagagatcgattacctactaaatccaacttggcagatcgtggcattacatctgtggaggatcgattttgtg 37191378  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    | |||||||||||||| |||||||||||||||||| | |||||||||||||| | ||| ||||| || |||||| |||||||||  |||||||||||| |    
T  37191379 tcacgggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgcattatggcctatggtgcgggaatggcttggtgtcaa 37191478  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    |||||| |||||||||  ||| ||||||||    
T  37191479 aggggtagattctcatgttatctcagatca 37191508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 51993891 - 51994012
Alignment:
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttgg 201  Q
    ||||||| |||||||||||||| ||||||||||||  ||||||  |||||||||||||    || ||||||||||||||| ||||||||| |||||||||    
T  51993891 tttgtgtcacgggatgtgggcatgttgaagatgtgtctcatttgattttgtcttgtccattcttcggtgctttgtggcctatggtgcgggattggcttgg 51993990  T
Q  202 tgtcgaaggggtcgattctcat 223  Q
    ||| |||||||| |||||||||    
T  51993991 tgtagaaggggtagattctcat 51994012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 51052558 - 51052363
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||     || || ||| || |||||||  | |||    
T  51052558 tcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgg 51052459  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttgg 196  Q
    || |||||  | |||||||||   || ||||||||   |||||| |||||||||||| | ||||||||||| || |||||  ||||||||| ||||    
T  51052458 ttatgtgtttctggatgtgggattgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattgg 51052363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 6050680 - 6050614
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  6050680 cctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttgg 6050614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 6259758 - 6259674
Alignment:
Q  138 atcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 222  Q
    ||||||| ||||||||||||   |||||||||||||| |||||  ||||||| || ||||| || || | |||||||||||||||    
T  6259758 atcatttgtttttgtcttgtgtaacttttggtgctttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 6259674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 47623140 - 47623192
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctac 54  Q
    ||||||||||| ||||| ||||||||||| || |||||||| |||||||||||    
T  47623140 cctctcaaagtatctattcttgcttggcggcttttgagggaccgcttacctac 47623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11909167 - 11909234
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||||| |||||| |||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  11909167 tcctctcaaagtatctatcattgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 11909234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 35541126 - 35541060
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| ||||| || |||  ||||||||    
T  35541126 cctctcaaagtatctatccttgcttggcgactactgagggatcggttacccacaaaacataatttgg 35541060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 8300251 - 8300481
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8300251 aaagtttctatccttgtttggcgactgttgagggatcgcttacctactaaatctaatttggtggcacgagggattatagctgtggaaaaccggttttgtg 8300350  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  8300351 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgccttgtggcctctgatgcgggcttggcttggtgtcga 8300450  T
Q  208 aggggtcgattctcatactatgtcagatcac 238  Q
    ||||||||||||||||||||| |||||||||    
T  8300451 aggggtcgattctcatactatctcagatcac 8300481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 25857493 - 25857723
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  25857493 aaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggtggcacgagggattatagctgtggaaaaccgattttgtg 25857592  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  25857593 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtttgacttttggtgccttgtggcctctggtgcgggcttggcttggtgtcga 25857692  T
Q  208 aggggtcgattctcatactatgtcagatcac 238  Q
    ||||||||||||||||||||| |||||||||    
T  25857693 aggggtcgattctcatactatctcagatcac 25857723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 27767113 - 27766885
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||| ||| |||||| ||  ||||||||| ||||||||||    
T  27767113 aaagtttatatccttgcttggcgactgttgagggatcgtttacctacaaaatcaaatttggtggaacgtgggattatatatgtggaaaatcggttttgtg 27767014  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | |||| ||||||||||||||||||    
T  27767013 taacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgctttgtggcct-ttgtgcaggcttggcttggtgtcga 27766915  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    ||||||||||||||||||||| ||||||||    
T  27766914 aggggtcgattctcatactatttcagatca 27766885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 33385443 - 33385672
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| || ||| || |||||||||| ||||||||||    
T  33385443 aaagtttctatccttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtggcacgtggaattatatctgtggaaaatcggttttgtg 33385542  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||| |||||||||||||||||||    
T  33385543 tatcgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgtgggcttggcttggtgtcga 33385642  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    | | || ||||||||| |||| ||||||||    
T  33385643 atgagtagattctcatgctatctcagatca 33385672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 10776835 - 10776662
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||| |||||| || |||||||||| ||||||||||    
T  10776835 aaagtttctatccttgcttggcgactgctgagggatcgtttacctactaaatcaaatttggtggcacgtgggattatatctgtggaaaatcggttttgtg 10776736  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcct 181  Q
    || ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||    
T  10776735 tatcgggatgtgggcaagttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcct 10776662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 18359161 - 18359388
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||| ||||||||||||||  ||||||||||||| |||||||||||||| || ||||  |  || |  ||| ||  ||||||  | ||||||||||    
T  18359161 aaagtttcaatccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcagatcgtgc-attatatatgtggaggatcggttttgtg 18359259  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    | ||||||| |||||| |||||||||||||||||| | |||||||||||||||| ||| ||||| ||||||||| ||| |||||| ||||||||||||||    
T  18359260 tcacgggatctgggcatgttgaagatgtgaatcatatgtttttgtcttgtccgattttcggtgcattgtggcctatggggcgggcatggcttggtgtcga 18359359  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    | |||| ||||||||| |||| ||||||||    
T  18359360 a-gggtagattctcatgctatctcagatca 18359388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 27795458 - 27795339
Alignment:
Q  104 tgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtg 203  Q
    ||||| ||||| |||||||| ||||||||||||  |||||| ||||||||||||||    |||||||||||||||||| ||||||||| ||| |||||||    
T  27795458 tgtgtcacgggctgtgggcatgttgaagatgtgtctcatttgtttttgtcttgtcctttctttggtgctttgtggcctatggtgcgggattgacttggtg 27795359  T
Q  204 tcgaaggggtcgattctcat 223  Q
    | | |||||| |||||||||    
T  27795358 tagtaggggtagattctcat 27795339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 19255282 - 19255406
Alignment:
Q  98 cggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggc 197  Q
    ||||| ||||| || ||||| ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || ||| |  |||||||||| ||||    
T  19255282 cggttgtgtgtcactggatgcgggcacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttggtgccttatggacattggtgcgggcatggc 19255381  T
Q  198 ttggtgtcgaaggggtcgattctca 222  Q
    | || || | |||||||||||||||    
T  19255382 tcggagtggtaggggtcgattctca 19255406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 23238462 - 23238265
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||||||||||||||||||| | || ||||| ||||| |||||||| |||  ||||||||     || || ||||||||| ||||    |||    
T  23238462 tcctctcaaagtttctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcgg 23238363  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggct 198  Q
    || |||||  | ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| |||| || |||||  ||||||| || |||||    
T  23238362 ttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgagcatggct 23238265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 28535737 - 28535804
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||||||||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  28535737 tcctctcaaagtttctatccttgcttggcgacttctgagggatcggttacctacaaaaaataatttgg 28535804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 10774347 - 10774293
Alignment:
Q  183 tggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatgtcagatca 237  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||    
T  10774347 tggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctgagatca 10774293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 33169602 - 33169533
Alignment:
Q  135 tgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgt 204  Q
    ||||||||||||||||||||||||||   |||| ||| ||||||||  ||||||| ||||||||||||||    
T  33169602 tgaatcatttatttttgtcttgtccgtactttgatgcgttgtggccgatggtgcgagcttggcttggtgt 33169533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 12825277 - 12825082
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| | ||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||     || || ||| || |||||||  | |||    
T  12825277 tcctctcaaagtatgtatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgg 12825178  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttgg 196  Q
    || |||||  | |||||||||   || ||||||||   |||||| |||||||||||| | ||||||||||| || |||||  ||||||||| ||||    
T  12825177 ttatgtgtttctggatgtgggattgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattgg 12825082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 18089935 - 18090026
Alignment:
Q  113 ggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgt 204  Q
    ||||||||||||||||| || ||||||||| | ||||||||||| |||  |||||| || ||||||||| ||||  ||| |||||| |||||    
T  18089935 ggatgtgggcaggttgaggacgtgaatcatctgtttttgtcttgcccggtttttggagcgttgtggcctttggttagggattggctcggtgt 18090026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 42513797 - 42513731
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  42513797 cctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttgg 42513731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8228104 - 8228037
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||||| ||||||||||||||| | || ||||| ||||| |||||||| |||  ||||||||    
T  8228104 tcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttgg 8228037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30732376 - 30732443
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||||| |||||| |||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  30732376 tcctctcaaagtatctatctttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 30732443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 35983853 - 35983920
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||||| ||||||||||||||||| ||  ||||| |||| |||||||| |||  ||||||||    
T  35983853 tcctctcaaagtatctatccttgcttggcgacttctgaggaatcggttacctacaaaaaataatttgg 35983920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 28535852 - 28535958
Alignment:
Q  116 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 215  Q
    |||||| | || ||||||||  ||||||| |||||||||||| | |||||| |||| || |||||  |||||||||| |||||||| || | |||||| |    
T  28535852 tgtgggaatgtagaagatgtcgatcatttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcatggcttggagtggtaggggttg 28535951  T
Q  216 attctca 222  Q
    | |||||    
T  28535952 actctca 28535958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 35983980 - 35984074
Alignment:
Q  128 gaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 222  Q
    |||| ||| |||||||| |||||||||||| | |||||| |||| || |||||  |||||||||| || ||||| || | ||||||||| |||||    
T  35983980 gaagttgtcaatcatttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcatgacttggagtggtaggggtcgactctca 35984074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 19255186 - 19255251
Alignment:
Q  3 ctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||| |||||||||||||||||  |  |||||||||| |||||||| |||  ||||||||    
T  19255186 ctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttgg 19255251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 26072834 - 26072749
Alignment:
Q  137 aatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 222  Q
    |||||| | ||| ||||||||||  |||||||||| ||||||||  ||||| || | ||||| ||||| ||||||||||| |||||    
T  26072834 aatcatctgtttctgtcttgtccttcttttggtgcgttgtggccattggtgtggtcatggctcggtgttgaaggggtcgaatctca 26072749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 42928085 - 42927988
Alignment:
Q  125 gttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 222  Q
    ||||||||||| |||||||| || ||||| ||||| |||||| |||| || || ||  |||||||||| ||||| || || | ||||||||| |||||    
T  42928085 gttgaagatgtcaatcatttgttcttgtcatgtccaacttttagtgccttatgaccattggtgcgggcatggctcggagtggtaggggtcgactctca 42927988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27117223 - 27117291
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggt 69  Q
    |||||||||||| ||||||||||||||||| ||  ||||||| || ||||| || |||  |||||||||    
T  27117223 tcctctcaaagtatctatccttgcttggcgacttctgagggaccggttacccacaaaacttaatttggt 27117291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 12697884 - 12697654
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||| |||||| ||||||||||||| ||||||||||    
T  12697884 aaagtttctatccttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtggaacgtgggattatagctgtggaaaatcggttttgtg 12697785  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| || |||||| |||||||||||||||||||||||||    
T  12697784 taacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattatggcctttggtgcgggcttggcttggtgtcga 12697685  T
Q  208 aggggtcgattctcatactatgtcagatcac 238  Q
    ||||||||||||||||||||| || ||||||    
T  12697684 aggggtcgattctcatactatctccgatcac 12697654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 8361171 - 8360942
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||||||||||| |||||| ||| ||||| |||| ||||||| |||||| |||||||||||||| || ||| || |||| ||||| ||||||||||    
T  8361171 aaagtttctatccttgtttggcgactgctgaggaatcgtttacctagtaaatcaaatttggtggcacgtggaattatatctgttgaaaatcggttttgtg 8361072  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||    
T  8361071 tatcgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcga 8360972  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    |||||| ||||||||| |||| ||||||||    
T  8360971 aggggtagattctcatgctatctcagatca 8360942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 4548342 - 4548517
Alignment:
Q  62 aatttggtggcacgagggattttagctgtggaaaaccggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccga 161  Q
    |||||||||| ||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |    
T  4548342 aatttggtggaacgtgggattatagctgtggaaaatcggttttgtgtaacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgcccaa 4548441  T
Q  162 cttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatgtcagatca 237  Q
     ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4548442 tttttggtgcattgtggcctctggtgtgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatca 4548517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 20002796 - 20002560
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtgga------aaac-cgg 100  Q
    |||||||||||| |||||||||| |||||||||||||| |||||||||||||| || ||||  |  || || |||  | |||||||      |  | |||    
T  20002796 aaagtttctatcattgcttggcggctgttgagggatcgtttacctactaaatccaacttggcagaccgtggcattacatctgtggactgtggaggctcgg 20002697  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    |||||||| |||||||||||||| |||||||||||||||||| | ||||||||||||||   ||| ||||| ||||||||| |||||||||| |||||||    
T  20002696 ttttgtgtcacgggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccatttttcggtgcattgtggcctatggtgcgggcatggcttg 20002597  T
Q  201 gtgtcgaaggggtcgattctcatactatgtcagatca 237  Q
     || ||||||||| ||||||||| |||| ||||||||    
T  20002596 atgccgaaggggtagattctcatgctatctcagatca 20002560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 54483322 - 54483443
Alignment:
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttgg 201  Q
    ||||||| |||||||||||||| ||||||||||||  |||||| ||||||||||||||    |||||||||||||||||| ||||||||| ||| |||||    
T  54483322 tttgtgtcacgggatgtgggcatgttgaagatgtgtctcatttgtttttgtcttgtccattctttggtgctttgtggcctatggtgcgggattgacttgg 54483421  T
Q  202 tgtcgaaggggtcgattctcat 223  Q
    ||| | |||||| |||||||||    
T  54483422 tgtagtaggggtagattctcat 54483443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 48312072 - 48311951
Alignment:
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttgg 201  Q
    ||||||| |||||||||||||| ||||||||||||  |||||| ||||| ||||||||    || ||||||||||||||| ||||| ||| |||||||||    
T  48312072 tttgtgtcacgggatgtgggcatgttgaagatgtgtctcatttgtttttatcttgtccattcttcggtgctttgtggcctatggtgtgggattggcttgg 48311973  T
Q  202 tgtcgaaggggtcgattctcat 223  Q
    ||| |||||||| |||||||||    
T  48311972 tgtagaaggggtagattctcat 48311951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 55725827 - 55725891
Alignment:
Q  173 ttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatgtcagatca 237  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  55725827 ttgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcttactatttcagatca 55725891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 2822208 - 2822319
Alignment:
Q  110 acgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaag 209  Q
    |||| ||||||||| ||||||||||||  |||| | ||||| || ||||||   || ||||||||||||||| ||||||||||||||||||||||  |||    
T  2822208 acggaatgtgggcatgttgaagatgtgtctcatgtgtttttatcatgtccgttcttcggtgctttgtggcctatggtgcgggcttggcttggtgttaaag 2822307  T
Q  210 gggtcgattctc 221  Q
    |||| |||||||    
T  2822308 gggtagattctc 2822319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1828602 - 1828823
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||| | || ||| | ||| | |||||||| ||| |||||||||     || || |||||| || ||||    |||    
T  1828602 tcctctcaaagtatctatccttgcttggagactattgcgagataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcgg 1828701  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    || |||||  | || |||||| | |||||||||||  ||||||| |||||||||||| | |||||||||||||| || ||  ||||||| || ||||| |    
T  1828702 ttgtgtgtttctgggtgtgggaatgttgaagatgttgatcatttgtttttgtcttgtgcaacttttggtgctttatgaccattggtgcgagcatggctag 1828801  T
Q  201 gtgtcgaaggggtcgattctca 222  Q
    | || | |||||||||||||||    
T  1828802 gagtggtaggggtcgattctca 1828823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 47685957 - 47686178
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| |||  ||||||||     || || |||||| |||||||  | |||    
T  47685957 tcctctcaaagtatctatccttgcttggcgacttttgagagatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcgg 47686056  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    || |||||  | ||||||||| | || ||||||||   || ||| |||||||||||| | |||||| |||| || |||||  ||||||||| |||| | |    
T  47686057 ttatgtgtttctggatgtgggaatgtcgaagatgtttctcgtttgtttttgtcttgtgcaacttttagtgcattatggccgatggtgcgggattggttag 47686156  T
Q  201 gtgtcgaaggggtcgattctca 222  Q
    | || | ||||||||| |||||    
T  47686157 gagtggtaggggtcgactctca 47686178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 13270954 - 13271142
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggt 101  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||     || || ||| || |||||||  | ||||    
T  13270954 cctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggt 13271053  T
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgg 190  Q
    | || || || |||||||||   || |||||||| | | ||||||||||||||||| | ||||||||||| || |||||  ||||||||    
T  13271054 tatgagttactggatgtgggattgtcgaagatgttactaatttatttttgtcttgtgcaacttttggtgcattatggccgatggtgcgg 13271142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 55725748 - 55725815
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||| |||||||| |||||||||||||| || |||||||||||||||||||| ||||  |||||||    
T  55725748 tcctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttgg 55725815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 15740184 - 15740078
Alignment:
Q  116 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 215  Q
    |||||| | ||| ||||||| |||||||| |||||||||||||  ||||||||||| || |||||  ||||||| || ||||| || || | ||||||||    
T  15740184 tgtgggaatgttaaagatgttaatcatttgtttttgtcttgtctaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcg 15740085  T
Q  216 attctca 222  Q
    |||||||    
T  15740084 attctca 15740078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 7403867 - 7403770
Alignment:
Q  125 gttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 222  Q
    ||||||||||| |||||||| |||||||||||||| |||||| |||| || |||||  ||||| |||| ||||| || || | ||||||||| |||||    
T  7403867 gttgaagatgtcaatcatttgtttttgtcttgtccaacttttagtgccttatggccattggtgtgggcatggctcggagtggtaggggtcgactctca 7403770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 23642654 - 23642842
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggt 101  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||     || || ||| || |||||||  | ||||    
T  23642654 cctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggt 23642753  T
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgg 190  Q
    | || ||  | |||||||||   || |||||||| | |||||| |||||||||||| | ||||||||||| || |||||  ||||||||    
T  23642754 tatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgg 23642842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 47418881 - 47418693
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggt 101  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||   | || || ||| || ||| |||  | ||||    
T  47418881 cctctcaaagtatctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggaggagcggt 47418782  T
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgg 190  Q
    | || ||  | |||||||||   || |||||||| | |||||| |||||||||||| | ||||||||||| || |||||  ||||||||    
T  47418781 tatgcgttgcaggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgg 47418693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 2822100 - 2822162
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaat 64  Q
    ||||| ||||||||  ||| |||||||||  |||||||||||||||||||||||||| |||||    
T  2822100 cctctaaaagtttcagtccatgcttggcgattgttgagggatcgcttacctactaaagctaat 2822162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 45472778 - 45472824
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctac 54  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||    
T  45472778 aaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 11587384 - 11587439
Alignment:
Q  125 gttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcc 180  Q
    |||||| |||||||||| || ||||||||||| || | ||||||||||||||||||    
T  11587384 gttgaaaatgtgaatcacttgtttttgtcttgcccaaattttggtgctttgtggcc 11587439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 19740214 - 19740305
Alignment:
Q  113 ggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgt 204  Q
    ||||||||| | || || ||| |||||||| ||||||||||||||||    |||||||| |||||| |  ||||||| ||||||||||||||    
T  19740214 ggatgtggggatgtcgaggatctgaatcatctatttttgtcttgtccttactttggtgcgttgtggtcgatggtgcgagcttggcttggtgt 19740305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19755345 - 19755278
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||||| ||||||||||||||||| ||  |||| ||||| |||||||| |||  ||||||||    
T  19755345 tcctctcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttgg 19755278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19784461 - 19784528
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||||| ||||||||||||||||| ||  |||| ||||| |||||||| |||  ||||||||    
T  19784461 tcctctcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttgg 19784528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 46145619 - 46145550
Alignment:
Q  135 tgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgt 204  Q
    |||||||| |||||||||||||||||   |||| ||  ||||||||  ||||||| ||||||||||||||    
T  46145619 tgaatcatctatttttgtcttgtccgtactttgatgtgttgtggccgatggtgcgagcttggcttggtgt 46145550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 7403986 - 7403934
Alignment:
Q  6 tcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaa 58  Q
    ||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||    
T  7403986 tcaaagtctctatccttgcttggcgacttctgagggatcggttacctacaaaa 7403934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 14439823 - 14439595
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||||||| | ||||| || |||||||||||||| |||||||||||||| |||||||| | ||| |||||| || ||||||||   ||||||| ||    
T  14439823 aaagtttctatcttggcttgacgactgttgagggatcgtttacctactaaatcaaatttggtagaacgtgggattctatctgtggaagctcggttttatg 14439724  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||| | ||||| ||| ||||||||| |||||||||||||||||||||||||    
T  14439723 taacgggatgtgggtaggttgaagatgtgaatcattt-gttttgtcttgtccaatttttgatgcattgtggcctatggtgcgggcttggcttggtgtcga 14439625  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    |||||| ||||||||| |||| | ||||||    
T  14439624 aggggtagattctcatgctatcttagatca 14439595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 11000020 - 11000248
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||||||||||||||||| | ||||| |||||||| || ||||||||||| |||||||  | ||| |||||| || ||||||||   ||||||||||    
T  11000020 aaagtttctatccttgcttggtggctgtt-agggatcgtttgcctactaaatcaaatttggcagaacgtgggattctatctgtggaagctcggttttgtg 11000118  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    |||||| ||||||||| |||||||||||||||||||| || || |||||||| | ||||||||| ||||||||| |||||||||| ||||||||||||||    
T  11000119 taacggaatgtgggcatgttgaagatgtgaatcatttgttcttatcttgtccaatttttggtgcattgtggcctatggtgcgggcatggcttggtgtcga 11000218  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    |||||| ||||||||| |||| ||||||||    
T  11000219 aggggtagattctcatgctatctcagatca 11000248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 12645612 - 12645378
Alignment:
Q  3 ctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggtt 102  Q
    |||| |||||||| |||||||||||||| || |||||||||||||||||||| ||||  ||||||   |  ||  | ||| || || ||||    |||||    
T  12645612 ctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttgacagatcgcagaattctacctttggaggctcggtt 12645513  T
Q  103 ttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggt 202  Q
    |||||| || || |||||||| ||||||||||||| |||||| ||||||||||| || | |||||| || ||||||||| ||||||||||||||||||||    
T  12645512 ttgtgttacagggtgtgggcatgttgaagatgtgactcatttgtttttgtcttgcccaatttttggcgcattgtggcctatggtgcgggcttggcttggt 12645413  T
Q  203 gtcgaaggggtcgattctcatactatgtcagatca 237  Q
    ||||||||||| ||||||| | |||| ||||||||    
T  12645412 gtcgaaggggtagattctcttgctatttcagatca 12645378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 33515947 - 33516068
Alignment:
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttgg 201  Q
    ||||||| ||| |||||||||| ||||||||||||  |||| | ||||||||||||||    |||||||||||||||||| |||||||||||||||||||    
T  33515947 tttgtgtcacgagatgtgggcatgttgaagatgtgtctcatatgtttttgtcttgtcctttctttggtgctttgtggcctatggtgcgggcttggcttgg 33516046  T
Q  202 tgtcgaaggggtcgattctcat 223  Q
    |||||||||||| |||||||||    
T  33516047 tgtcgaaggggtagattctcat 33516068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 40176646 - 40176525
Alignment:
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttgg 201  Q
    ||||||| |||||||||||||| ||||||||||||  |||||| ||||||| ||||||    || ||||||||||||||| ||||||||| |||||||||    
T  40176646 tttgtgtcacgggatgtgggcatgttgaagatgtgtctcatttgtttttgttttgtccattcttcggtgctttgtggcctatggtgcgggattggcttgg 40176547  T
Q  202 tgtcgaaggggtcgattctcat 223  Q
    ||| |||||||| |||||||||    
T  40176546 tgtagaaggggtagattctcat 40176525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15917732 - 15917511
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||| ||||| | ||||||||||||| | ||| |||||||||| |||||||| |||  ||||||||     || || ||| |  || |||||   |||    
T  15917732 tcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatttggcaaatcgtggtattattcctttggaagtgcgg 15917633  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    || ||||| || || |||||||| |||||||||||||||||| | |||||||||||||| |||||||| || ||||||||  |||||| ||| |||||      
T  15917632 ttgtgtgtcactggttgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaacttttggcgcgttgtggccattggtgcaggcatggctca 15917533  T
Q  201 gtgtcgaaggggtcgattctca 222  Q
    |||| | |||||||| ||||||    
T  15917532 gtgttgtaggggtcggttctca 15917511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 38604551 - 38604672
Alignment:
Q  116 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 215  Q
    |||||||| ||||||||||| |||||| | |||||||  ||||||||||| ||  |||| |||||| |||||||||| |||||||| ||| |||||||      
T  38604551 tgtgggcatgttgaagatgtaaatcatgtgtttttgttgtgtccgactttcgggactttatggcctatggtgcgggcctggcttggagtcaaaggggtaa 38604650  T
Q  216 attctcatactatgtcagatca 237  Q
    |||||||| |||| | ||||||    
T  38604651 attctcatgctattttagatca 38604672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 41207094 - 41206897
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||     || || ||| |  |  ||||    |||    
T  41207094 tcctctcaaagtctctatccttgcttggcggcttctgagggatcggttacctacaaaaaataatttggcaaatcgtggcattattcccttggaggcgcgg 41206995  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggct 198  Q
    || ||||| || ||||| ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || |||||  || ||||||| |||||    
T  41206994 ttgtgtgtcactggatgcgggcacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttggtgccttatggccattgatgcgggcatggct 41206897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 28252672 - 28252579
Alignment:
Q  127 tgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattct 220  Q
    |||||||||||||||||| ||||||||||||||   ||||||||| || ||| || |||||||||  ||||| || || ||||| || ||||||    
T  28252672 tgaagatgtgaatcatttgtttttgtcttgtccattttttggtgccttatggtctttggtgcgggagtggctgggggttgaaggtgttgattct 28252579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 28252797 - 28252745
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctac 54  Q
    ||||| ||||| ||||| ||||||||||| || ||||||||||||||||||||    
T  28252797 cctctaaaagtatctattcttgcttggcggcttttgagggatcgcttacctac 28252745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 40176745 - 40176689
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaa 58  Q
    ||||| ||||||||  |||||||||||||  ||||||||||||| ||||||||||||    
T  40176745 cctctaaaagtttcagtccttgcttggcggttgttgagggatcgtttacctactaaa 40176689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4552247 - 4552180
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||| ||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  4552247 tcctcttaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 4552180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 37254829 - 37254600
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||| ||||||||||||||  ||||||||||||| |||||||||||||| || ||||  |   | || ||| || ||||||| |  ||||||||||    
T  37254829 aaagtttcaatccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcagattgtggcattatatctgtggagactcggttttgtg 37254730  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    | |||| |||||| ||  ||||||||||||||||| | |||||||||||||| | ||| ||||| ||||||||| |||||||||| ||||||||||||||    
T  37254729 tcacggaatgtggacattttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgcattgtggcctatggtgcgggcatggcttggtgtcga 37254630  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    ||||||  |||||||| |||| ||||||||    
T  37254629 aggggtaaattctcatgctatctcagatca 37254600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 25619530 - 25619301
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    |||||||||||||||||||||||  |||||||||| || |||||||||||||| || ||||  |  || || |||  | |||||||  |||| |||||||    
T  25619530 aaagtttctatccttgcttggcggttgttgagggaacgattacctactaaatccaacttggcagatcgtggcattgcatctgtggaggaccgattttgtg 25619431  T
Q  108 taacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcga 207  Q
    | || ||||||||||| |||||||||||||||||| | |||||||||||||| | ||| ||||| |||||||||  ||||||||  ||||||||||| ||    
T  25619430 tcacaggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgcattgtggcctaaggtgcgggaatggcttggtgttga 25619331  T
Q  208 aggggtcgattctcatactatgtcagatca 237  Q
    ||| || ||||||||| |||| ||||||||    
T  25619330 aggtgtagattctcatgctatctcagatca 25619301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 18532699 - 18532568
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggttttgtg 107  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| | |||||| | ||| || ||| || |||||||||| ||||||||||    
T  18532699 aaagtttatatccttgcttggcgactgttgagggatcgtttacctactaaatcaattttggtagaacgtggaattctatctgtggaaaatcggttttgtg 18532600  T
Q  108 taacgggatgtgggcaggttgaagatgtgaat 139  Q
    ||||||||||||||||||||||||||||||||    
T  18532599 taacgggatgtgggcaggttgaagatgtgaat 18532568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 18530454 - 18530352
Alignment:
Q  135 tgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatgtcaga 234  Q
    |||||||||| |||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  18530454 tgaatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatatcaga 18530355  T
Q  235 tca 237  Q
    |||    
T  18530354 tca 18530352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 37919507 - 37919401
Alignment:
Q  116 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 215  Q
    |||||| | ||||||||||| |||||||||||||||||||||   |||||| |||| || |||||  |||||||||| ||||| || || | ||||||||    
T  37919507 tgtgggaacgttgaagatgttaatcatttatttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtaggggtcg 37919408  T
Q  216 attctca 222  Q
    | |||||    
T  37919407 aatctca 37919401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 235625 - 235722
Alignment:
Q  125 gttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 222  Q
    ||||||||||| |||||||| |||||||||||| | |||||| |||| || |||||  |||||||||| ||||| || || | ||||||||| |||||    
T  235625 gttgaagatgttaatcatttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcgggcatggctcggagtggtaggggtcgactctca 235722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 4938191 - 4938379
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggt 101  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||     || || ||| || |||||||  | ||||    
T  4938191 cctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggt 4938290  T
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgg 190  Q
    | || ||  | |||||||||   || |||||||| | |||||| |||||||||||| | ||||||||||| || |||||  ||||||||    
T  4938291 tatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgg 4938379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 11277314 - 11277470
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| |||  ||||||||     || || |||||| || ||||    |||    
T  11277314 tcctctcaaagtatctatccttgcttggcgacttttgagagatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcgg 11277413  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgt 157  Q
    || |||||  | ||||||||| | ||||||||||| |||||||| |||| |||||||    
T  11277414 ttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgttttagtcttgt 11277470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17720713 - 17720646
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 68  Q
    |||||||||||||||||||||||| ||||| ||  |||||||||| |||||||| |||  ||||||||    
T  17720713 tcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaagataatttgg 17720646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 29967941 - 29967856
Alignment:
Q  113 ggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggct 198  Q
    ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| ||||||| |||||  ||||||| || |||||    
T  29967941 ggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgctttatggccaatggtgcgagcatggct 29967856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 235502 - 235552
Alignment:
Q  4 tctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctac 54  Q
    ||||||||| ||||||||||||||||| ||  |||||||||| ||||||||    
T  235502 tctcaaagtctctatccttgcttggcgacttctgagggatcggttacctac 235552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 105906 - 106094
Alignment:
Q  2 cctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccggt 101  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||     || || ||| || |||||||  | ||||    
T  105906 cctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggt 106005  T
Q  102 tttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgg 190  Q
    | || ||  | |||||||||   || |||||||| | |||||| |||||||||||| | ||||||||||| || |||||  ||||||||    
T  106006 tatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgg 106094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11267 - 11488
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacgagggattttagctgtggaaaaccgg 100  Q
    |||||||||||| ||||||||||||||||| ||  | |||||||| |||||||| |||  ||||||||     || || ||| || |||||||  | |||    
T  11267 tcctctcaaagtatctatccttgcttggcgacttctcagggatcggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcgg 11366  T
Q  101 ttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttg 200  Q
    || |||||  | ||||||||| | || ||| ||||   |||||| |||||||||||| | |||||||| || || |||||  ||||||||| |||| | |    
T  11367 ttatgtgtttctggatgtgggaatgtcgaaaatgtttttcatttgtttttgtcttgtgcaacttttggagcattatggccgatggtgcgggattggttag 11466  T
Q  201 gtgtcgaaggggtcgattctca 222  Q
    | || | ||||||||| |||||    
T  11467 gagtggtaggggtcgactctca 11488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3330 - 3277
Alignment:
Q  1 tcctctcaaagtttctatccttgcttggcgtctgttgagggatcgcttacctac 54  Q
    |||||| ||||||||||||||||||||| | || ||||| ||||| ||||||||    
T  3330 tcctcttaaagtttctatccttgcttggagacttttgagagatcggttacctac 3277  T

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Target: scaffold0472; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 3218 - 3174
Alignment:
Q  113 ggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgt 157  Q
    ||||||||| | ||||||||||| |||||||| ||||||||||||    
T  3218 ggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgt 3174  T

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Target: scaffold0161 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 6078 - 6126
Alignment:
Q  8 aaagtttctatccttgcttggcgtctgttgagggatcgcttacctacta 56  Q
    ||||| |||||| ||||||||||||||||||||||  | ||||||||||    
T  6078 aaagtctctatctttgcttggcgtctgttgagggactgattacctacta 6126  T

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