View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_26 (Length: 751)
Name: NF8981_low_26
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 19 - 727
Target Start/End: Original strand, 44731076 - 44731784
Alignment:
| Q |
19 |
gattattctcaaatggataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731076 |
gattattctcaaatggataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactc |
44731175 |
T |
|
| Q |
119 |
aggaggagagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgttgaatgcgatgagat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
44731176 |
aggaggagagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaagctaacattttggtgattaaggatgttgaatgcaatgagat |
44731275 |
T |
|
| Q |
219 |
taagattattaccaagacacttaattgtttgcctattggctaatattgagcatttttgtaaagagatgttgggttatgctgatcttgtggaggaggttgc |
318 |
Q |
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| T |
44731276 |
tgagattattaccaagacacttaattgtttgcctattggctaatattgagcatttttgtaaagagaagttgggttatgctgatcttgtggaggaggttgc |
44731375 |
T |
|
| Q |
319 |
tcttggggatgatgggaagattgtaaagatttcaggtgttaaggatatgggtaa-gaccaaaactgtgcttgttcgtggatccaacttgcttgtgcttga |
417 |
Q |
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| T |
44731376 |
tcttggggatgatgggaagattgtaa-gatttcaggtgttaaggatatgggtaaagaccacaactgtgcttgttcgtggatccaacttgcttgtgcttga |
44731474 |
T |
|
| Q |
418 |
tgaagcgtagaggagtttgcatgatgctttgtgtgttgttaggtgtttggttggtaagaggtttttgattgctggtggtggagcgccccagattgagttg |
517 |
Q |
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| T |
44731475 |
tgaagcgcagaggagtttgcatgatgctttgtgtgttgttaggtgtttggttggtaagaggtttttgattgctggtggtggagcgcccgagattgagttg |
44731574 |
T |
|
| Q |
518 |
tcgaggcagttgggtgtttgggcaaaggtgctgcatgggatggaaagttcctgcattcaagcatttgctgaggcacttgaagtcattccgtatactttgg |
617 |
Q |
| |
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| T |
44731575 |
tcgaggcagttgggtgcttgggcaaaggtgctgcatgggatggaaggttcctgcattcaagcatttgctgaggcactcgaagtcattccgtatactttgg |
44731674 |
T |
|
| Q |
618 |
ccgagaatgctggtttgaatccgattgcgattgttactgagctgaggaatcgtcatgcacagggtgagataaatgctggaatcaatgtgaggaaaggtca |
717 |
Q |
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| T |
44731675 |
ccgagaatgctggtttgaatccgattgcgattgttactgagctgaggaatcgtcatgcacaaggtgagataaatgctggaatcgatgtgaggaaaggtca |
44731774 |
T |
|
| Q |
718 |
aattacaaac |
727 |
Q |
| |
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| |||||||| |
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| T |
44731775 |
atttacaaac |
44731784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 730
Target Start/End: Original strand, 50701622 - 50702326
Alignment:
| Q |
19 |
gattattctcaaatggataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactc |
118 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||| || |||||||| || || |||||| | ||||| || ||| | || |||||||||||||||| || |
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| T |
50701622 |
gattactctcagatggataggattttgaaggaagagaggagttatattttagggatgattaagaagatcaaggcaaccggttgtaatgtgttgttgattc |
50701721 |
T |
|
| Q |
119 |
aggaggagagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgttgaatgcgatgagat |
218 |
Q |
| |
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| T |
50701722 |
---aaaagagtattttgagagatgctgttactgatttgtctttgcattatcttgctaaagctaagattttagtgattaaagatgttgagcgtgacgagat |
50701818 |
T |
|
| Q |
219 |
taagattattaccaagacacttaattgtttgcctattggctaatattgagcatttttgtaaagagatgttgggttatgctgatcttgtggaggaggttgc |
318 |
Q |
| |
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| || | ||||||||||| |||||||||||||||||| ||||||||||| |||||| || |||| ||||||||||||||||||||| || ||| || | |
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| T |
50701819 |
tgagttcattaccaagactcttaattgtttgcctatt-gctaatattgaacattttcgtgctgagaagttgggttatgctgatcttgtagaagagctttc |
50701917 |
T |
|
| Q |
319 |
tcttggggatgatgggaagattgtaaagatttcaggtgttaaggatatgggtaagaccaaaactgtgcttgttcgtggatccaacttgcttgtgcttgat |
418 |
Q |
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||||||| |||||||||||||| |||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||| ||| |
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| T |
50701918 |
tcttggg---gatgggaagattgtgaagatttctggtattaaggatatgggaaagaccacaactgtgcttgttcgtggatctaatttgcttgtgctcgat |
50702014 |
T |
|
| Q |
419 |
gaagcgtagaggagtttgcatgatgctttgtgtgttgttaggtgtttggttggtaagaggtttttgattgctggtggtggagcgccccagattgagttgt |
518 |
Q |
| |
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||||| || | ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || || |||| ||| ||| |
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| T |
50702015 |
gaagctgagcgaagtctgcatgatgctttgtgtgttgttaggtgtttggttgccaagaggtttttgattgcaggtggtggtgctccggagatagagctgt |
50702114 |
T |
|
| Q |
519 |
cgaggcagttgggtgtttgggcaaaggtgctgcatgggatggaaagttcctgcattcaagcatttgctgaggcacttgaagtcattccgtatactttggc |
618 |
Q |
| |
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||||||| ||||||| |||||| ||||| ||||||| ||||| ||| ||| |||| ||||||||||||||||||||||| |||| ||||| | || |
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| T |
50702115 |
cgaggcaattgggtgcttgggctaaggttttgcatggcatggagggttactgtattcgtgcatttgctgaggcacttgaagttgttccatatacacttgc |
50702214 |
T |
|
| Q |
619 |
cgagaatgctggtttgaatccgattgcgattgttactgagctgaggaatcgtcatgcacagggtgagataaatgctggaatcaatgtgaggaaaggtcaa |
718 |
Q |
| |
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|||||||| |||||||| |||||||| |||||||||||||| |||||||||||||| | |||||||| ||| ||||||||||||| |||||||||||| |
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| T |
50702215 |
tgagaatgcgggtttgaacccgattgcaattgttactgagctaaggaatcgtcatgctaaaggtgagatcaatactggaatcaatgtcaggaaaggtcaa |
50702314 |
T |
|
| Q |
719 |
attacaaacatc |
730 |
Q |
| |
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| T |
50702315 |
attacaaacatc |
50702326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 338 - 455
Target Start/End: Original strand, 20827039 - 20827156
Alignment:
| Q |
338 |
attgtaaagatttcaggtgttaaggatatgggtaagaccaaaactgtgcttgttcgtggatccaacttgcttgtgcttgatgaagcgtagaggagtttgc |
437 |
Q |
| |
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||||| |||||||| ||| ||| ||||||||| ||||||| ||||||||||||||||||||| || ||||||||||| ||||||| || | ||| ||| |
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| T |
20827039 |
attgtgaagatttctggtattagggatatgggaaagaccacaactgtgcttgttcgtggatctaatttgcttgtgctcgatgaaggtgagcgaagtctgc |
20827138 |
T |
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| Q |
438 |
atgatgctttgtgtgttg |
455 |
Q |
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| T |
20827139 |
acgatgctttgtgtgttg |
20827156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 20826776 - 20826854
Alignment:
| Q |
125 |
agagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgt |
203 |
Q |
| |
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||||||||||||| |||| || | |||||||||||||||||||||||| |||| |||| ||||||||||||| ||||| |
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| T |
20826776 |
agagtattttgagagatgttgttgctgatttgtctttgcattatcttgttaaagctaagtttttggtgattaaagatgt |
20826854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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