View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_260 (Length: 252)
Name: NF8981_low_260
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_260 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 11592102 - 11591881
Alignment:
| Q |
18 |
cttaggaaacgatcaaccaagaagaggtagaaactagggagcatagtgaaggaaaaggaaatgtcaacatgaaatatgtagaagatgatgaagattatgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592102 |
cttaggaaacgatcaaccaagaagaggtagaaactagggagcatagtgaaggaaaaggaaatgtcaacatgaaatatgtagaagatgatgaagattatgt |
11592003 |
T |
|
| Q |
118 |
agaggtgatgtgtgtnnnnnnngagctcaaagaattttctcctaattcttggaatggttgcaatccacaggaacaaaccagcaagcaaagatatctctcc |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592002 |
agaggtgatgtgtgtaaaaaaagagctcaaagaattttctcctaattcttggaatggttgcaatccacaggaacaaaccagcaagcaaagatatctctcc |
11591903 |
T |
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| Q |
218 |
agccaaatttgatactccatct |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
11591902 |
agccaaatttgatactccatct |
11591881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 11105626 - 11105405
Alignment:
| Q |
18 |
cttaggaaacgatcaaccaagaagaggtagaaactagggagcatagtgaaggaaaaggaaatgtcaacatgaaatatgtagaagatgatgaagattatgt |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11105626 |
cttaggaaacgatcaaccaagaagaggtaaaaactagggagcatagtgaaggaaaaggaaatgtcaacatgaaatatgtagaagatgatgaagattatgt |
11105527 |
T |
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| Q |
118 |
agaggtgatgtgtgtnnnnnnngagctcaaagaattttctcctaattcttggaatggttgcaatccacaggaacaaaccagcaagcaaagatatctctcc |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11105526 |
agaggtgatgtgtgtaaaaaaagagctcaaagaattttctcctaattcttggaatggttgcaatccacaggaacaaaccagcaagcaaagatatctctcc |
11105427 |
T |
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| Q |
218 |
agccaaatttgatactccatct |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
11105426 |
agccaaatttgatactccatct |
11105405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 11118800 - 11118584
Alignment:
| Q |
20 |
taggaaacgatcaaccaagaagaggtagaaactagggagcatagtgaaggaaaaggaaatgtcaacatgaaatatgtagaagatgatgaagattatgtag |
119 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||| || ||| |||||||||| |||||||||| ||| |||||||||||||||| |||||| |
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| T |
11118800 |
taggtaacgatcaaccaagaagaggtagaaaccagggagcataatgcaggcaaaggaaatgccaacatgaaagatgaagaagatgatgaagataatgtag |
11118701 |
T |
|
| Q |
120 |
aggtgatgtgtgtnnnnnnngagctcaaagaattttctcctaattcttggaatggttgcaatccacaggaacaaaccagcaagcaaagatatctctccag |
219 |
Q |
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|||| ||| |||| ||||||||| ||||||||||||| ||||||||||||| ||| | || |||||||||||||||||||||||||||| |
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| T |
11118700 |
aggtaatgagtgtagaaaaatagctcaaagtattttctcctaatgtaaggaatggttgcaacccataagactaaaccagcaagcaaagatatctctccag |
11118601 |
T |
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| Q |
220 |
ccaaatttgatactcca |
236 |
Q |
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||| ||||||||||||| |
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| T |
11118600 |
ccacatttgatactcca |
11118584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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