View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_266 (Length: 250)
Name: NF8981_low_266
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_266 |
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Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 21998276 - 21998353
Alignment:
| Q |
2 |
ttatttcaccattggtcgtcaaactcagcaaataatcagagttccaaaggtttggtcgtggccatatgggttatgaga |
79 |
Q |
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| T |
21998276 |
ttatttcaccattggtcgtcaaactcagcaaataatcagagttccaaaggtttggtcgtggccatatgggttatgaga |
21998353 |
T |
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Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 22084028 - 22084104
Alignment:
| Q |
3 |
tatttcaccattggtcgtcaaactcagcaaataatcagagttccaaaggtttggtcgtggccatatgggttatgaga |
79 |
Q |
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| T |
22084028 |
tatttcaccattggtcgtcaaactcagcaaataatcagagttccaaaggtttggtcgtggccatatgggttatgaga |
22084104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 22084694 - 22084757
Alignment:
| Q |
77 |
agaattcctttaatgatatgattaatgtgaatctatgtttatgatacaacttatatgagaacta |
140 |
Q |
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| T |
22084694 |
agaattcctttaatgatatgattaatgtgaatctatgtttatgatacgacttatatgagaacta |
22084757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 21998436 - 21998495
Alignment:
| Q |
77 |
agaattcctttaatgatatgattaatgtgaatctatgtttatgatacaacttatatgaga |
136 |
Q |
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| T |
21998436 |
agaattcctttaatgatatgattaatgtgaatctatgtttatgatatgacttatacgaga |
21998495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 27321098 - 27321022
Alignment:
| Q |
152 |
aataatttttctcaaggataaaattgggccttataatttttctcaaggaccaaaataaatcctcactaaaaaatcaa |
228 |
Q |
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| T |
27321098 |
aataatttttctcaaggataaaattgggccttataatttttctcaaggaccaaaataaatcctcactaaaaaatcaa |
27321022 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 15303679 - 15303631
Alignment:
| Q |
90 |
tgatatgattaatgtgaatctatgtttatgatacaacttatatgagaac |
138 |
Q |
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| T |
15303679 |
tgatatgattaatgtggatctatttttatcatatgacttatatgagaac |
15303631 |
T |
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