View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_27 (Length: 737)
Name: NF8981_low_27
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 272 - 727
Target Start/End: Complemental strand, 29554741 - 29554285
Alignment:
| Q |
272 |
aggaactcaataatggaagtgaaaccgtagttcaaggtggatcgaagaaagcttttgataccatgttaacaatctaggtttctgagacaataacaaaaca |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29554741 |
aggaactcaataatggaagtgaaaccgtagttcaaggtggatcgaacaaagcttttgataccatgttaacaatctaggtttcagagacaataacaaaaca |
29554642 |
T |
|
| Q |
372 |
aaaaacaaagacgacaattagagtttcatatagtttagcattacgaaaagatataaaagaatataaataaaacataatagactctaaactaacatctgac |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29554641 |
aaaaacaaagacgacaattagagtttcatatagtttagcattacgaaaagatataaaagaatataaataaaacataatagactctaaactaacatctgac |
29554542 |
T |
|
| Q |
472 |
aggcctttgagcagaagacatgtgtttatagtgcgtcactgacgctgttgattgcacatcacgcattcagtgacagatccgacgtttgcatacgtgcatt |
571 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29554541 |
aggcctttgagcagaagacatttgtttatagtgcgtcactgacgctgttgattgcacatcacgcattcagtgacagatccgacgtttgcatacgtgcatt |
29554442 |
T |
|
| Q |
572 |
tctcacaagaccactcatcgcacatggcgcattcagtggcagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagttaacac |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29554441 |
tctcacaagaccactcatcgcacatggcgcattcagtggcagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagttaacac |
29554342 |
T |
|
| Q |
672 |
-gaaactcgattcgtccccattcctcttccgcttcttcccttactgctctctgcttc |
727 |
Q |
| |
|
| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29554341 |
ggtagctcgattcgtcccctttcctcttccgcttcttcccttactgctccctgcttc |
29554285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 29554907 - 29554798
Alignment:
| Q |
106 |
accgaaaatggcaccaatattgacgcaaaactcagcagcacaaattcaaaagaatagaccacatattgctaactgaacaaaagcaacagattaaattttc |
205 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29554907 |
accgaaaatggcaccaatagtgacgcaaaactcagcagcacaaattcaaaagaatagaccacatattgctaactgaacaaaagcaacagattaaattttc |
29554808 |
T |
|
| Q |
206 |
ttcaacagaa |
215 |
Q |
| |
|
|||||||||| |
|
|
| T |
29554807 |
ttcaacagaa |
29554798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 473 - 660
Target Start/End: Complemental strand, 29539731 - 29539544
Alignment:
| Q |
473 |
ggcctttgagcagaagacatgtgtttatagtgcgtcactgacgctgttgattgcacatcacgcattcagtgacagatccgacgtttgcatacgtgcattt |
572 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| |||| ||||||||||||||||||| | ||||| | ||| ||||||||| ||||||||| || |||| |
|
|
| T |
29539731 |
ggcctttgagtagaaggcatgtgtttctagtgggtcattgacgctgttgattgcacaccgcgcatgctgtggcagatccgatgtttgcataggtacattg |
29539632 |
T |
|
| Q |
573 |
ctcacaagaccactcatcgcacatggcgcattcagtggcagatccgacgtttgcataggtacatcgctcacaataccactcattatca |
660 |
Q |
| |
|
| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29539631 |
cccacaagaccactcactgcacatggcgcaagcagtggcagatccgacgtttgcataggtacattcaacacaataccactcattatca |
29539544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 473 - 589
Target Start/End: Complemental strand, 42194963 - 42194847
Alignment:
| Q |
473 |
ggcctttgagcagaagacatgtgtttatagtgcgtcactgacgctgttgattgcacatcacgcattcagtgacagatccgacgtttgcatacgtgcattt |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||| ||||| | ||| ||||||| || |||||||| || |||| |
|
|
| T |
42194963 |
ggcctttgagcagaagacatgtgtttatagtgggtcattgccgctcttgattgcacatcgcgcatgcggtggcagatccaacatttgcataggtacattg |
42194864 |
T |
|
| Q |
573 |
ctcacaagaccactcat |
589 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
42194863 |
ctcacaagaccactcat |
42194847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 591 - 668
Target Start/End: Complemental strand, 42194911 - 42194834
Alignment:
| Q |
591 |
gcacatggcgcattcagtggcagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagttaa |
668 |
Q |
| |
|
|||||| |||||| | ||||||||||| || ||||||||||||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
42194911 |
gcacatcgcgcatgcggtggcagatccaacatttgcataggtacattgctcacaagaccactcattatcatcagttaa |
42194834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 592 - 724
Target Start/End: Original strand, 42780219 - 42780361
Alignment:
| Q |
592 |
cacatggcgcattcagtggcagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagtta---------acac-gaaactcgat |
681 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||| | | |||||| |
|
|
| T |
42780219 |
cacatcgcacatgcagtggcagatccgacgtttgcataggtacattgctcacaagaccactcattatcattagttattatgctggacactgtagctcgat |
42780318 |
T |
|
| Q |
682 |
tcgtccccattcctcttccgcttcttcccttactgctctctgc |
724 |
Q |
| |
|
| |||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
42780319 |
ttgtcccctttcctcttccacttcttcccttactgctccctgc |
42780361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 105 - 209
Target Start/End: Original strand, 42779759 - 42779863
Alignment:
| Q |
105 |
caccgaaaatggcaccaatattgacgcaaaa-ctcagcagcacaaattcaaaagaatagaccacatattgctaactgaacaaaagcaacagattaaattt |
203 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| | || |||||||||| ||| ||||| |
|
|
| T |
42779759 |
caccaaaaatggcaccaatagagacgcaaaaacgcagcagcacaaattcaaaagaatagaccacatattgctagc-aaaaaaaagcaacaaattcaattt |
42779857 |
T |
|
| Q |
204 |
tcttca |
209 |
Q |
| |
|
|||||| |
|
|
| T |
42779858 |
tcttca |
42779863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 42779948 - 42780026
Alignment:
| Q |
294 |
aaccgtagttcaaggtggatcgaagaaagcttttgataccatgttaacaatctaggtttctgagacaataacaaaacaa |
372 |
Q |
| |
|
|||||||||| ||| |||||| || |||||| ||||||||| ||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
42779948 |
aaccgtagtttaagatggatcaaacaaagctcttgataccacgttaatagtctaggtttcaaagacaataacaaaacaa |
42780026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 464 - 589
Target Start/End: Original strand, 42780152 - 42780282
Alignment:
| Q |
464 |
catctgacaggcctttgagcagaagacatgtgtttatagtgcgtcactgacgctgttgattgcacatcacg-----cattcagtgacagatccgacgttt |
558 |
Q |
| |
|
||||| ||| |||||||| || ||||||| | ||| ||||| |||| |||| ||||||||| |||| ||| ||| ||||| |||||||||||||| |
|
|
| T |
42780152 |
catctaacaagcctttgaacaaaagacatttttttgtagtgggtcattgacactgttgattacacaacacatcgcacatgcagtggcagatccgacgttt |
42780251 |
T |
|
| Q |
559 |
gcatacgtgcatttctcacaagaccactcat |
589 |
Q |
| |
|
||||| || |||| ||||||||||||||||| |
|
|
| T |
42780252 |
gcataggtacattgctcacaagaccactcat |
42780282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 27314022 - 27313979
Alignment:
| Q |
301 |
gttcaaggtggatcgaagaaagcttttgataccatgttaacaat |
344 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
27314022 |
gttcaaggaggatcgaacaaagctcttgataccatgttaacaat |
27313979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University