View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_272 (Length: 244)
Name: NF8981_low_272
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_272 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 2803471 - 2803643
Alignment:
| Q |
1 |
tgtgtaatcagagcatggcagtgacagttgtggtatgtattcatcctctttaccgagaaaaccgctgctaaacattgaggcatgatgttgaatccatcac |
100 |
Q |
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| T |
2803471 |
tgtgtaatcagagcatggcagtgacagttgtggtatgtattcatcctctttaccgagaaaaccgctgctaaacattgaggcatgatgttgaatccatcac |
2803570 |
T |
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| Q |
101 |
aaagtacaatcaagtagcatctcgaaaaccagcttgtcctattgaacctctttaacattaacataaacattaa |
173 |
Q |
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| T |
2803571 |
aaagtacaatcaagtagcatctcgaaaaccagcttgtcctattgaacctctttaacattaacattaacattaa |
2803643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 2803724 - 2803764
Alignment:
| Q |
192 |
taactatgcattaggaattcatggctctggctttttgatgt |
232 |
Q |
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| T |
2803724 |
taactatgcattaggaattcatggctctggctttttgatgt |
2803764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 2803634 - 2803673
Alignment:
| Q |
152 |
ttaacattaacataaacattaatattttgatcaaattaac |
191 |
Q |
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| T |
2803634 |
ttaacattaacataaacattaatattttgataaaattaac |
2803673 |
T |
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