View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_278 (Length: 239)
Name: NF8981_low_278
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_278 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4031499 - 4031264
Alignment:
| Q |
1 |
tataatcttatatatctatgattaacatatttatagaactatgaagacaattacaaagaaacaaaaaacaagcatatcccttcatttg------------ |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4031499 |
tataatcttatatatctatgattaacatatttatagaactatgaagacaattacaa-gaaacaaaaaacaagcatatcccttcatttgatatccctttat |
4031401 |
T |
|
| Q |
89 |
---ttaattaattgaagagaaggttaaaatcaaccatctacaattaaagtcaattaggagagattataattattgtcatatcatatggtcatctcttcac |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031400 |
ttgttaattaattgaagagaaggttaaaatcaaccatctacaattaaagtcaattaggagagattataattattgtcatatcatatggtcatctcttcac |
4031301 |
T |
|
| Q |
186 |
tagttaggtgaattacaaagatgtgatacacataaat |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4031300 |
tagttaggtgaattacaaagatgtgatacacataaat |
4031264 |
T |
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