View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_279 (Length: 239)
Name: NF8981_low_279
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_279 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 8843194 - 8842977
Alignment:
| Q |
13 |
catcagcttgggcttgaaatcgagaaggagaataatctccgttacgcatccattcagaattgtcaatacagatcatagtcgcctgttgaaggaaagaatt |
112 |
Q |
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| T |
8843194 |
catcagcttgagcttgaaatcgagaaggagaataatctccgttacgcatccattcagaattgtcaatacagatcatagtcgcctgttgaagaaaagaatt |
8843095 |
T |
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| Q |
113 |
cggtnnnnnnnncctagaaatatgcatgttatggtaaattgaaatcgagagggggtgtaatcggaaattacctcgagcaccatggttgaagatttagaag |
212 |
Q |
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| T |
8843094 |
cggtaaaaaaa-cctagaaatatgcatgttatggtaaattgaaatcgagagggggtgtaatcggaaattacctcgagcaccatggttgaagatttagaag |
8842996 |
T |
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| Q |
213 |
cgagcgtgtgatgatgatg |
231 |
Q |
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| T |
8842995 |
cgagcgtgtgatgatgatg |
8842977 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 31885665 - 31885711
Alignment:
| Q |
15 |
tcagcttgggcttgaaatcgagaaggagaataatctccgttacgcat |
61 |
Q |
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| T |
31885665 |
tcagattgagcttgaaatcgagaaggagagtaatcaccgttacgcat |
31885711 |
T |
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