View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_282 (Length: 237)
Name: NF8981_low_282
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_282 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 3529343 - 3529137
Alignment:
| Q |
15 |
aaaatcatctggtttatagatatcagcttcaaataacaccaatctaatatttgcatgtggaaagcctctcataaagcttactttggactcgtcctctgat |
114 |
Q |
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| T |
3529343 |
aaaatcatctggtttatatatgtcagcttcaaataacaccaatcttgtatttgcatgaggaaagcctctcagaaagcttactttggactcgtcctctgat |
3529244 |
T |
|
| Q |
115 |
atcaataaatgaattcacttttaactcgtgcttaattaagagtttgatctaaatttagatcctaatggcactgcacataacaactgctgaaccgtttaaa |
214 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3529243 |
atcaataaatgaattcacttttaactcctgcttaattaagagtttgatctaaatttagatcctaatggcactgcacataacaactgctggaccgtttaaa |
3529144 |
T |
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| Q |
215 |
tttaatt |
221 |
Q |
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||||||| |
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| T |
3529143 |
tttaatt |
3529137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 3546653 - 3546529
Alignment:
| Q |
14 |
caaaatcatctggtttatagatatcagcttcaaataacaccaatctaatatttgcatgtggaaagcctctcataaagcttactttggactcgtcctctga |
113 |
Q |
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|||||||||||||||| || || || |||||||||| |||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||||| |
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| T |
3546653 |
caaaatcatctggtttgtatatgtctgcttcaaatagcaccaatctagtatttgcatgaggaaagcctctcagaaagcttactttggactcatcctctga |
3546554 |
T |
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| Q |
114 |
tatcaataaatgaattcacttttaa |
138 |
Q |
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||||||||||||| |||| ||||| |
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| T |
3546553 |
aatcaataaatgaagtcacctttaa |
3546529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 3537690 - 3537577
Alignment:
| Q |
15 |
aaaatcatctggtttatagatatcagcttcaaataacaccaatctaatatttgcatgtggaaagcctctcataaagcttactttggactcgtcctctgat |
114 |
Q |
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|||| |||||||||| || || ||||||||||||| |||||||||| |||||||||||||||||||| | | || | ||||||||| ||||||||||| |
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| T |
3537690 |
aaaaccatctggtttgtatatgtcagcttcaaatagcaccaatctagtatttgcatgtggaaagcctttaaggaaccctactttggattcgtcctctgaa |
3537591 |
T |
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| Q |
115 |
atcaataaatgaat |
128 |
Q |
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|| ||||||||||| |
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| T |
3537590 |
ataaataaatgaat |
3537577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 3546505 - 3546417
Alignment:
| Q |
133 |
ttttaactcgtgcttaattaagagtttgatctaaatttagatcctaatggcactgcacataacaactgctgaaccgtttaaatttaatt |
221 |
Q |
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||||||||||||| |||||||||| |||||||||| ||| ||| |||| | |||| |||||||||||| ||||||||||||||||| |
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| T |
3546505 |
ttttaactcgtgcataattaagagcttgatctaaacttaaatcttaatcgtgctgcttgtaacaactgctggaccgtttaaatttaatt |
3546417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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