View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_286 (Length: 236)
Name: NF8981_low_286
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_286 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 40953213 - 40953422
Alignment:
| Q |
14 |
atttatatatagagtatatgctgctagctgaatataataaattttctgaattccattcatgcttgctttgtgtcaatcatcctcactttcactttcctat |
113 |
Q |
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| T |
40953213 |
atttatatatagagtatatgctgctagctgaatataattaattttctgaattccattcatgcttgctttgtgtcaatcatcctcactttcactttcctac |
40953312 |
T |
|
| Q |
114 |
aatagtaagaaacattcttgataactattacagatgttttgcttcttttacgtgtttattctttttggattagccataaatagaaaacagtacattttta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40953313 |
aatagtaagaaacattcttgataactattacagatgttttgcttcttttacgtgtttattctttttggattagccataaatagaaaacagtacattttta |
40953412 |
T |
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| Q |
214 |
aattgatgtc |
223 |
Q |
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|||||||||| |
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| T |
40953413 |
aattgatgtc |
40953422 |
T |
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