View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_288 (Length: 233)
Name: NF8981_low_288
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_288 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 12749020 - 12748938
Alignment:
| Q |
132 |
tgcagcttctatagtagcttttcaagaacaatggatcaacatgcttatgctagaaatgaagctagaagaagaagagaagatgg |
214 |
Q |
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| T |
12749020 |
tgcagcttctatagtagcttttcaagaacaatggatcaacatgcttatgctagaaatgaagctagaagaagaagagaagatgg |
12748938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 27236772 - 27236836
Alignment:
| Q |
42 |
ttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgcac |
106 |
Q |
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| T |
27236772 |
ttatgtgtttatgattgaaaatgcagccttttcatggagttctaagaaggaatcagtagttgcac |
27236836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 53010613 - 53010769
Alignment:
| Q |
18 |
agatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgcacagtttttctgt |
117 |
Q |
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| T |
53010613 |
agatgacaggaaaagcactgcggcttatgtgttcatgattggaaatgcagccttttcatggagttctaagaaggaataagtagttgcactatcttcctgt |
53010712 |
T |
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| Q |
118 |
gaaacttaatacattgcagcttctatagtagcttttcaagaacaatggatcaacatg |
174 |
Q |
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| T |
53010713 |
gaagcagagtacattgcagcttccatgacagcatgtcaagctcaatggatcaacatg |
53010769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 56562695 - 56562783
Alignment:
| Q |
18 |
agatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgcac |
106 |
Q |
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| T |
56562695 |
agatgacaggaaaaacaatgctgcttatgtgttcatgattggaaatgcagccttttcatggagttctaagaaggaatcagtagttgcac |
56562783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 21081072 - 21081022
Alignment:
| Q |
43 |
tatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaa |
93 |
Q |
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| T |
21081072 |
tatgtgtttaagtatggtaatgcagcggtatcatggagttctaagaaggaa |
21081022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 9507118 - 9507198
Alignment:
| Q |
25 |
aggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgca |
105 |
Q |
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| T |
9507118 |
aggaaaaacactgctgcttatgtgttcatgattggaaatgcagccttttcatggagttctaagaaggaatcagtagttgca |
9507198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 45486450 - 45486363
Alignment:
| Q |
18 |
agatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgca |
105 |
Q |
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| T |
45486450 |
agatgacaggaaaagcattgctgcttatgtgttcatgattggaaatgcagccttttcatggagttctaagaaggaatcagtagttgca |
45486363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 5988907 - 5989041
Alignment:
| Q |
42 |
ttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgcacagtttttctgtgaaacttaatacattgcagcttct |
141 |
Q |
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| T |
5988907 |
ttatgtgttcatgattggaaatgcagccttttcatggagttctaagaaggaagcagtagttgcattatcttcctgtgaggcagagtacattgcagcttct |
5989006 |
T |
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| Q |
142 |
atagtagcttttcaagaacaatggatcaacatgct |
176 |
Q |
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| T |
5989007 |
atgacagcatgtcaagctcaatggatcaacatgct |
5989041 |
T |
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