View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_298 (Length: 224)
Name: NF8981_low_298
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_298 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 31527619 - 31527435
Alignment:
| Q |
18 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31527619 |
agatgaaaggtgaagttggctcaaaatctagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
31527520 |
T |
|
| Q |
118 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggct |
202 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31527519 |
tggagagagtgacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggct |
31527435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 32592312 - 32592493
Alignment:
| Q |
18 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
117 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32592312 |
agatgaaaggtgaagttggctcaaaatctagggaaggacaaacactgcagaatgcagcaaaaattaacgcggagacgaaaattattgctatgcagagggc |
32592411 |
T |
|
| Q |
118 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgag |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32592412 |
tggagagagtgacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgag |
32592493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 51825030 - 51824851
Alignment:
| Q |
10 |
agaagcagagatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatg |
109 |
Q |
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|||||| |||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |
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| T |
51825030 |
agaagctgagatgaaaggtgaagttggttcgaaatctagggaaggacaaacactgcagaatgcagcaaaaattgacgcagagacgaaagttattgcgatg |
51824931 |
T |
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| Q |
110 |
cagagggctggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctga |
189 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51824930 |
cagagggctggagagagtaacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctga |
51824851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 37031012 - 37030834
Alignment:
| Q |
18 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
117 |
Q |
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|||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||| |||||||| || |||||||| ||||||| |||||||| || |
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| T |
37031012 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcgaaaattgatgcagagacgaaggttattgcaatgcagagagc |
37030913 |
T |
|
| Q |
118 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
196 |
Q |
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||||||| |||| ||||||||| | | ||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37030912 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaagtttttgagaatcaaagagaggctgaagtggct |
37030834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 49188501 - 49188323
Alignment:
| Q |
18 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
117 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||| |||||||| || |
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| T |
49188501 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
49188402 |
T |
|
| Q |
118 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
196 |
Q |
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||||||| |||| ||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49188401 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
49188323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 49192237 - 49192053
Alignment:
| Q |
18 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
117 |
Q |
| |
|
||||||||||||| |||| || |||| ||||||||||||||||| || ||||||||||||||||| || ||||| || |||||||| ||||||||||| |
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| T |
49192237 |
agatgaaaggtgagattggttcgaaattgagggaaggacaaacactacaaaatgcagcaaaaattgatgcagagacaaagattattgcgatgcagagggc |
49192138 |
T |
|
| Q |
118 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggct |
202 |
Q |
| |
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||||||| | |||||||||||| | | ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
49192137 |
tggagagggcgacaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcagagagaagctgaagtggctgaggct |
49192053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 49208514 - 49208330
Alignment:
| Q |
18 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
117 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| | ||||| ||||| |||||||| || |||||||| ||||||| ||||||||||| |
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| T |
49208514 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgatccagaacgcagcgaaaattgatgcagagacgaaggttattgcgatgcagagggc |
49208415 |
T |
|
| Q |
118 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggct |
202 |
Q |
| |
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|||||| |||| || ||||| | | ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49208414 |
tggagaaggtgagaaacagggaattaaagtgaggactgaagtgaaagtttttgagaatcaaagagaggctgaagtggctgaggct |
49208330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 49213354 - 49213170
Alignment:
| Q |
18 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
117 |
Q |
| |
|
|||||||||||||| |||| || |||| |||| ||||||||| ||||||||||||||||||||||| || |||||||| |||| || ||||| ||||| |
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|
| T |
49213354 |
agatgaaaggtgaaattggttcgaaattgagggtaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttatagcgatgcaaagggc |
49213255 |
T |
|
| Q |
118 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggct |
202 |
Q |
| |
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||||| ||||| ||| ||||| | | ||| || ||||||||||| || ||||||||||| |||||||||||||||||||||||| |
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| T |
49213254 |
aggagaaagtgagaagcagggaattaaagtgagaactgaagtgaaagtatttgagaatcagagagaggctgaagtggctgaggct |
49213170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 49203310 - 49203159
Alignment:
| Q |
51 |
aaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggctggagagagtgacaaggagggattaagagttag |
150 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| || ||||| ||| ||||||| |||||||| | ||| || |||||||||||||| | | ||| || |
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|
| T |
49203310 |
aaggaaaaacgctgcagaatgcagcgaagattgatgcagagacaaaagttattgcactgcagaggaccggatagggtgacaaggagggaattaaagtgag |
49203211 |
T |
|
| Q |
151 |
gactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggct |
202 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
49203210 |
gactgaagtgaaggtttttgagaatcagagagaggctgaggtggctgaggct |
49203159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 26756880 - 26756696
Alignment:
| Q |
18 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
117 |
Q |
| |
|
||||||||||||||||||| || |||| ||| |||||||||| |||||||||||||| |||||||| || ||||||||| | ||||| | ||||||||| |
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| T |
26756880 |
agatgaaaggtgaagttggatcgaaatcgaggaaaggacaaacgctgcagaatgcagcgaaaattgatgcagagacgaaagtcattgcgacgcagagggc |
26756781 |
T |
|
| Q |
118 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggct |
202 |
Q |
| |
|
||||||| ||| ||||| | | | | ||||||||||||||||||||||||||||||| | ||||||||||| ||||| |||||| |
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|
| T |
26756780 |
tggagaggctgagaaggaagaaattaaagttaggactgaagtgaaggtttttgagaataagagagaggctgaggtggccgaggct |
26756696 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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