View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_303 (Length: 222)
Name: NF8981_low_303
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_303 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 32477188 - 32477302
Alignment:
| Q |
1 |
tttagattttggaacacttacaaatattaaaaagcaaaaagaggaagtagttaaatcaatttgggttgacattatcttaaaatcttaaagtgtg-tttat |
99 |
Q |
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| T |
32477188 |
tttagattttggaacacttacaaatattaaaaagcaaaa-gaggaagtagttaaatcaatttgggttgacattatcttaaaaccttaaagtgtgttttat |
32477286 |
T |
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| Q |
100 |
atcaaaattttaaatt |
115 |
Q |
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| T |
32477287 |
attaaaatttcaaatt |
32477302 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 32477295 - 32477356
Alignment:
| Q |
158 |
ttcaaattcaattctttcgatggtaattttaatgaattaatagatacaaaactttattctga |
219 |
Q |
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||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| |
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| T |
32477295 |
ttcaaattcaattctttcgatggcaattttaatgaactagtagatacaaaactttattctga |
32477356 |
T |
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