View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_33 (Length: 665)

Name: NF8981_low_33
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_33
NF8981_low_33
[»] chr3 (1 HSPs)
chr3 (18-652)||(50472461-50473093)


Alignment Details
Target: chr3 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 18 - 652
Target Start/End: Original strand, 50472461 - 50473093
Alignment:
Q  18 agaataccgacaaatgaaatctccaaaatgataacatgatattaagatagtaacaaaatctacggatttgtctcatctaagaatccatcctattgtttcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  50472461 agaataccgacaaatgaaatctccaaaatgataacatgatattaagatagtaacacaatctacggatttgtctcatctaagaatccatgctattgtttcc 50472560  T
Q  118 tttggattgggttctaatcccattaacatttctcttttaaaatagttgagattgcgggttgcaatgtcagtgggcaattacgcatgttttccactttaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50472561 tttggattgggttctaatcccattaacatttctcttttaaaatagttgagattgcgggttgcaatgtcagtgggcaattacgcatgttttccactttaaa 50472660  T
Q  218 tgatgcagttgtacttttttatgtgaaaaatatatcaattcatatggctttaagatcaaaacaaaatcacaagtggttcagttgtacttaataataataa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50472661 tgatgcagttgtacttttttatgtgaaaaatatatcaattcatatggctttaagatcaaaacaaaatcacaagtggttcagttgtacttaataataataa 50472760  T
Q  318 aatttataatctgtcatatatcgtctacattttctaactaacattttatccaagtttaattttgttacattgagttaataaattacattatcatttgact 417  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  50472761 aatttatagtctgtcatatatcgtctacattttctaactaacattttatctaagtttaattttgttacattgagttaataaattacattatcatttgaat 50472860  T
Q  418 atatgcattttgctgtcaaattatataaagaatgcatgtaagcacacacaactttttaacctttgagcgtaaacaaattaaactttatcctccagatctt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50472861 atatgcattttgctgtcaaattatataaagaatgcatgtaagcacacacaactttttaacctttgagcgtaaacaaattaaactttatcctccagatctt 50472960  T
Q  518 ctattatggggttcaaattaaaattttacatcaatcatattctaatatatagctgccagctcacatgcattcaatttctgcagctaaaaacacttgcaaa 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50472961 ctattatggggttcaaattaaaattttacatcaatcatattctaatatatagctgccagctcacatgcattcaatttctgcagctaaaaacacttgtaaa 50473060  T
Q  618 cagtgaaacaagtgagaaatatgccctcgttatct 652  Q
    ||||||| |   |||||||||||||||||||||||    
T  50473061 cagtgaagc--ttgagaaatatgccctcgttatct 50473093  T

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