View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_35 (Length: 659)
Name: NF8981_low_35
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_35 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: scaffold0370 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 19 - 648
Target Start/End: Original strand, 13795 - 14419
Alignment:
| Q |
19 |
agtaaggctttccgagaagattatgagaagaagattctacaatcattagagagacgacaactaagtggagatgggagaagaagacctgataaatcttgca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13795 |
agtaaggctttccgagaagattatgagaagaagattctacaatcattagagagacgacaactaagtggagatgggagaagaagacctgataaatcttgca |
13894 |
T |
|
| Q |
119 |
gtactatgcatctgtaatggtgggaggaaatgttgaaatattataagtgtacatgttattctattgaaatagtaagcaacagtacattaacaaaatttgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13895 |
gtactatgcatctgtaatggtgggaggaaatgttgaaatattgtaagtgtacatgttattctgctgaaatagtaagcaacagtacattaacaaaatttgc |
13994 |
T |
|
| Q |
219 |
atacatgaaaccatgttgtatatatggcttgctttttctttaacactaaacctgttaagtataagacgaagaatcgttctaatgtaaaaattgtagcata |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13995 |
atacatgaaaccatgttgtatatatggcttgcttttt-tttaacaccaaacctgttaagtataagacgaagaatcgttctaatgtaaaaattgtagcata |
14093 |
T |
|
| Q |
319 |
gtcaagtgtcaggtacaattgttttggttannnnnnnagctacactaagaaatgcattaacggaagcagaaagatcaagggataacttgtgaaaataag- |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
14094 |
gtcaagtgtcaggtacaattgttttggttatttttttagctacactaagaaatgcattaacggaagcagaaagatcaagggataacttgcgaaaataagt |
14193 |
T |
|
| Q |
418 |
nnnnnnnnnattgattggatgtgttaattacaatgtatgaacaaattaaactatttatagtgtacctagtgcctattagccatgtggcctacatagtgta |
517 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
14194 |
tttttttttattgattggatgtgttaattacaatgtatgaac-----aaactatttatagtgtacctagggcctattagccatgtggcctacatagtgta |
14288 |
T |
|
| Q |
518 |
agacatgtccggctaattttccgagtgtgcatgataactcccatgttagtgggatcgtggcgccccatgttcggcttcaatgtcctctcctcagcatgat |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
14289 |
agacatgtccggctaattttccgagtgtgcatgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcctcagcatgat |
14388 |
T |
|
| Q |
618 |
ctgttgatactatcttttttcacgcatctct |
648 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
14389 |
ctgttgatactatcttttttcacgcatctct |
14419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 218 - 648
Target Start/End: Original strand, 8704 - 9129
Alignment:
| Q |
218 |
catacatgaaaccatgttgtatatatggcttgctttttctttaacactaaacctgttaagtataagacgaagaatcgttctaatgtaaaaattgtagcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8704 |
catacatgaaaccatgttgtatatatggcttgcttttt-tttaacaccaaacctgttaagtataagacgaagaatcgttctaatgtaaaaattgtagcat |
8802 |
T |
|
| Q |
318 |
agtcaagtgtcaggtacaattgttttggttannnnnnnagctacactaagaaatgcattaacggaagcagaaagatcaagggataacttgtgaaaataag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8803 |
agtcaagtgtcaggtacaattgttttggttatttttttagctacactaagaaatgcattaacggaagcagaaagatcaagggataacttgcgaaaataag |
8902 |
T |
|
| Q |
418 |
nnnnnnnnn-attgattggatgtgttaattacaatgtatgaacaaattaaactatttatagtgtacctagtgcctattagccatgtggcctacatagtgt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8903 |
ttttttttttattgattggatgtgttaattacaatgtatgaacaaa-----ctatttatagtgtacctagggcctattagccatgtggcctacatagtgt |
8997 |
T |
|
| Q |
517 |
aagacatgtccggctaattttccgagtgtgcatgataactcccatgttagtgggatcgtggcgccccatgttcggcttcaatgtcctctcctcagcatga |
616 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
8998 |
aagacatgtccggctaattttccgagtgtgcatgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcctcagcatga |
9097 |
T |
|
| Q |
617 |
tctgttgatactatcttttttcacgcatctct |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
9098 |
tctgttgatactatcttttttcacgcatctct |
9129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 38638850 - 38638948
Alignment:
| Q |
21 |
taaggctttccgagaagattatgagaagaagattctacaatcattagagagacgacaactaagtggagatgggagaagaagacctgataaatcttgcag |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
38638850 |
taaggctttcagagaagattatgagaagaaggttctacaatcattagagagacgagaactaagtggagatgggcgaagaagacctgataaatcatgcag |
38638948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 38634725 - 38634847
Alignment:
| Q |
21 |
taaggctttccgagaagattatgagaagaagattctacaatcattagagagacgacaactaagtggagatgggagaagaagacctgataaatcttgcagt |
120 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||| |||||||| |||||| ||| |||||||| || | | |
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| T |
38634725 |
taagactttccgagaagattatgagaaaaaggttcggcaatcattagagagacggcaactaagtagagatgggcgaagaaaacc-gataaatcatggaat |
38634823 |
T |
|
| Q |
121 |
actatgcatctgtaatggtgggag |
144 |
Q |
| |
|
| ||||| |||||||||||||| |
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|
| T |
38634824 |
attatgctattgtaatggtgggag |
38634847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 608
Target Start/End: Original strand, 8821847 - 8821904
Alignment:
| Q |
551 |
ataactcccatgttagtgggatcgtggcgccccatgttcggcttcaatgtcctctcct |
608 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| |
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|
| T |
8821847 |
ataactcccatggtagtgggatcgtggcgccccacattcggcttcagtttcctctcct |
8821904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 581
Target Start/End: Complemental strand, 17559154 - 17559115
Alignment:
| Q |
542 |
gtgtgcatgataactcccatgttagtgggatcgtggcgcc |
581 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
17559154 |
gtgtgcgtgataactcccatgttagtgggatcgtggcgcc |
17559115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 564 - 624
Target Start/End: Original strand, 11483176 - 11483236
Alignment:
| Q |
564 |
tagtgggatcgtggcgccccatgttcggcttcaatgtcctctcctcagcatgatctgttga |
624 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||| | |||||| |||||||||| ||||||| |
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| T |
11483176 |
tagtgggatcgtggcaccccatgtttggcctcactttcctcttctcagcatgacctgttga |
11483236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Original strand, 8073578 - 8073611
Alignment:
| Q |
427 |
attgattggatgtgttaattacaatgtatgaaca |
460 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
8073578 |
attgattggatgtggtaattacaatgtatgaaca |
8073611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 608
Target Start/End: Complemental strand, 22782141 - 22782077
Alignment:
| Q |
544 |
gtgcatgataactcccatgttagtgggatcgtggcgccccatgttcggcttcaatgtcctctcct |
608 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||||||| |||||| |||||||| ||||||||| |
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|
| T |
22782141 |
gtgcatgataactcccatcctagtgagattgtggcgcccgatgttctgcttcaatctcctctcct |
22782077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Complemental strand, 27843872 - 27843839
Alignment:
| Q |
427 |
attgattggatgtgttaattacaatgtatgaaca |
460 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
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|
| T |
27843872 |
attgattgaatgtgttaattacaatgtatgaaca |
27843839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 590
Target Start/End: Complemental strand, 49373354 - 49373306
Alignment:
| Q |
542 |
gtgtgcatgataactcccatgttagtgggatcgtggcgccccatgttcg |
590 |
Q |
| |
|
|||||| |||||||| |||||||||| | ||||||| |||||||||||| |
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|
| T |
49373354 |
gtgtgcttgataactaccatgttagttgaatcgtggtgccccatgttcg |
49373306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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