View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_38 (Length: 630)

Name: NF8981_low_38
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_38
NF8981_low_38
[»] chr5 (6 HSPs)
chr5 (1-438)||(16577932-16578369)
chr5 (450-582)||(16578491-16578622)
chr5 (231-360)||(16560918-16561047)
chr5 (232-360)||(16572284-16572412)
chr5 (32-111)||(16571999-16572078)
chr5 (6-113)||(16560632-16560739)


Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 16577932 - 16578369
Alignment:
Q  1 cctacgtttctcaatcagcttctgtaattgctccttttttgctcccaccactttttcaactacttttcctttcttcaatagtataaatgttggcattgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16577932 cctacgtttctcaatcagcttctgtaattgctccttttttgctcccaccactttttcaactacttttcctttcttcaatagtataaatgttggcattgct 16578031  T
Q  101 tgcacctgaaatgcacttgccacctcctgttttcatacattttgcattatcatattattttagtaaaaatgttggatatatatagatataagatatcaaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16578032 tgcacctgaaatgcacttgccacgtcctgttttcatacattttgcattatcatattattttagtaaaaatgttggatatatatagatataagatatcaaa 16578131  T
Q  201 acgtaattaaaaggaattaatcatataaatcataccattaactcatccacgtcaatcttaatgaactcagcatctttgtattttgcagctaattctttga 300  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16578132 aggtaattaaaaggaattaatcatatatatcataccattaactcatccacgtcaatcttaatgaactcaacatctttgtattttgcagctaattctttga 16578231  T
Q  301 taattgggtccatgtatttgcaaggtccacaccaagtagccgtgaaatcaatgaccatctttaaaaataattaagaaacaaaattaaccacctcataaaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16578232 taattgggtccatgtatttgcaaggtccacaccaagtagccgtgaaatcaatgaccatctttaaaaataattaagaaacaaaattaaccacctcgtaaaa 16578331  T
Q  401 taaagattttcacccaaataataagaaagttatagcca 438  Q
     |||   ||||| ||||||||||||||| ||| |||||    
T  16578332 caaaatatttcagccaaataataagaaaattacagcca 16578369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 450 - 582
Target Start/End: Original strand, 16578491 - 16578622
Alignment:
Q  450 ttaaaatcttggttaagcatgtcgctaaaatttgtgacgagaaaaaccaagagagttttcannnnnnnnnnngttggtaaattaattatatgataaattt 549  Q
    ||||||| ||| ||||||||||| ||||| |||||||||||||||||| ||| ||||||||           ||||||||||||||||||||||||||||    
T  16578491 ttaaaattttgattaagcatgtcactaaattttgtgacgagaaaaaccgagaaagttttcatttttttttt-gttggtaaattaattatatgataaattt 16578589  T
Q  550 tgacatacttcgaagtttgattgaatattgata 582  Q
    | | |||||| |||||||| |||||||||||||    
T  16578590 ttagatactttgaagtttggttgaatattgata 16578622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 231 - 360
Target Start/End: Original strand, 16560918 - 16561047
Alignment:
Q  231 cataccattaactcatccacgtcaatcttaatgaactcagcatctttgtattttgcagctaattctttgataattgggtccatgtatttgcaaggtccac 330  Q
    ||||||||||| ||||| || |||| ||||||||||||| ||||  ||||||||||||| || ||||| |||| ||| |||||   ||||||||||||||    
T  16560918 cataccattaattcatcaacatcaagcttaatgaactcaacatcagtgtattttgcagcaaaatctttcataactggatccataactttgcaaggtccac 16561017  T
Q  331 accaagtagccgtgaaatcaatgaccatct 360  Q
    ||||  | || ||||||||||| |||||||    
T  16561018 accattttgctgtgaaatcaataaccatct 16561047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 232 - 360
Target Start/End: Original strand, 16572284 - 16572412
Alignment:
Q  232 ataccattaactcatccacgtcaatcttaatgaactcagcatctttgtattttgcagctaattctttgataattgggtccatgtatttgcaaggtccaca 331  Q
    |||||||||| ||||||||||||||||| ||||| ||  | |   ||||||||||||| || ||||  || ||||| |||||||||||||||||||||||    
T  16572284 ataccattaattcatccacgtcaatcttgatgaaatctactttgatgtattttgcagcaaagtcttgaatgattggatccatgtatttgcaaggtccaca 16572383  T
Q  332 ccaagtagccgtgaaatcaatgaccatct 360  Q
    ||| | |||||| || ||||| |||||||    
T  16572384 ccatgcagccgtaaattcaataaccatct 16572412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 16571999 - 16572078
Alignment:
Q  32 tccttttttgctcccaccactttttcaactacttttcctttcttcaatagtataaatgttggcattgcttgcacctgaaa 111  Q
    ||||||||||| || || || || ||||| ||||||||||||||||  ||||| |||||||||||||||||||| |||||    
T  16571999 tccttttttgcccctacaaccttgtcaacaacttttcctttcttcatcagtatgaatgttggcattgcttgcacttgaaa 16572078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 16560632 - 16560739
Alignment:
Q  6 gtttctcaatcagcttctgtaattgctccttttttgctcccaccactttttcaactacttttcctttcttcaatagtataaatgttggcattgcttgcac 105  Q
    |||| ||||||| | | |||| || ||| ||| |||||||||||||||| ||||| |||||||||||||| |  |||| ||| ||||||| ||  |||||    
T  16560632 gtttttcaatcatcctttgtagttcctcttttcttgctcccaccactttatcaacaacttttcctttcttaatgagtaaaaaagttggcaatgaatgcac 16560731  T
Q  106 ctgaaatg 113  Q
    ||| ||||    
T  16560732 ctggaatg 16560739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University