View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_4 (Length: 1020)

Name: NF8981_low_4
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_4
NF8981_low_4
[»] chr4 (17 HSPs)
chr4 (372-887)||(34137672-34138195)
chr4 (153-350)||(34139108-34139306)
chr4 (10-156)||(34139330-34139476)
chr4 (159-310)||(34136197-34136348)
chr4 (10-156)||(34136378-34136524)
chr4 (955-1020)||(34137540-34137605)
chr4 (10-153)||(34142013-34142156)
chr4 (960-1016)||(34133633-34133689)
chr4 (159-213)||(34141926-34141980)
chr4 (955-1016)||(34141207-34141268)
chr4 (486-582)||(5535753-5535848)
chr4 (491-582)||(46462419-46462510)
chr4 (960-1013)||(34127363-34127416)
chr4 (494-582)||(21586931-21587019)
chr4 (488-551)||(6087503-6087566)
chr4 (495-549)||(12596748-12596802)
chr4 (512-582)||(23208677-23208747)
[»] chr2 (2 HSPs)
chr2 (488-578)||(29765707-29765797)
chr2 (513-582)||(10099591-10099660)
[»] chr7 (6 HSPs)
chr7 (512-554)||(34564994-34565036)
chr7 (512-575)||(27163196-27163259)
chr7 (483-582)||(37491275-37491374)
chr7 (488-582)||(43813132-43813226)
chr7 (488-553)||(3967773-3967838)
chr7 (517-582)||(6250636-6250701)
[»] chr1 (3 HSPs)
chr1 (493-560)||(44673898-44673965)
chr1 (493-551)||(6340640-6340698)
chr1 (494-546)||(29204487-29204537)
[»] chr3 (1 HSPs)
chr3 (488-553)||(39682616-39682681)
[»] chr5 (3 HSPs)
chr5 (507-582)||(14631042-14631117)
chr5 (507-582)||(18942025-18942100)
chr5 (533-582)||(30489135-30489184)
[»] scaffold0014 (1 HSPs)
scaffold0014 (512-582)||(133176-133246)
[»] chr6 (1 HSPs)
chr6 (485-582)||(7158260-7158357)


Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 372 - 887
Target Start/End: Complemental strand, 34138195 - 34137672
Alignment:
Q  372 ttattttacatatttattgaataatttatgtatctcatttttaatataggtcaaatataaagaagacaagttatcaatattttgtattcaaagtctctaa 471  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| | |    
T  34138195 ttatttttcatatttattgaataatttatgtatttcatttttaatataggtcaaataga--gaagacaagttatcaatattttgtattcaaagtctttca 34138098  T
Q  472 ataatattatttttgatcacaattataagcaaacatttaattttt-aggttaattgaataagtgatatatgtggtctatattatcaactataaacatcat 570  Q
    ||||||||||||   |||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  34138097 ataatattatttccaatcataattataagcaaaaatttatttttttaggttaattgaataagtgatatactaggtctatattatcaactataaacatcat 34137998  T
Q  571 ttattcaatgaaatcatatagtaatgttagtgacatcacatgtaactaatgctaactaactacgttatatgagatatgattgcattaagtgagattact- 669  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34137997 ttattcaatgaaatgatatagtaatgttagtgacatcacatgtaactaatgctaactaactacgttatatgagatatgattgcattaagtgagattacta 34137898  T
Q  670 ------accgttactaatattattaa-ttgttaatatttgattaatttggtcaatgctcagttaatattc-tttttaggaagtaagtaataaaattagtt 761  Q
          |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34137897 ccgactaccgttactaatattattaatttgttaatatttgattaatttggtcaatgctcagttaatattcttttttaggaagtaagtaataaaattagtt 34137798  T
Q  762 tttgttcatatttttcacaataagcacgagagaaaagtcacatatatgctctaaaactagtctagattcaatgtatatatataacccaataatactggtt 861  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  34137797 tttgttcatatttttcacaataagcacgagagaaaagtcacatatatgctctaaaactagtctagattcaatgtatatatataactcgataatactggtt 34137698  T
Q  862 ttgctcttgcaaattttcctacaaat 887  Q
    ||||||||||||||||||||||||||    
T  34137697 ttgctcttgcaaattttcctacaaat 34137672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 153 - 350
Target Start/End: Complemental strand, 34139306 - 34139108
Alignment:
Q  153 gtaacctcaagaaacaagaagaggagaatcttcaaatttatcattata--agctaccttagagaaagatattttaataaatgtattacttagctcatgta 250  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34139306 gtaacttcaagaaacaagaagaggagaatcttcaaatttatcattatataagctaccttagagaaagatattttaataaatgtatgacttagctcatgta 34139207  T
Q  251 aacaaccaaagattgatcggtgtttctgaaatgagcaactggctacagtcaaacttgctattagaattactgggtgcagtatgtatgcaatttatctcat 350  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||    
T  34139206 aacaaccaaagattgatcggtgtttctaaaatgagcaactggctacaatcaaatttg-tattagaattactgggtgcattatgtatgcaatttatctcat 34139108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 34139476 - 34139330
Alignment:
Q  10 ggagcacagagcattggtgaacaaggagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34139476 ggagcacagagcattggtgaacaaggagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagctt 34139377  T
Q  110 attaacgagcaaaacccttcaaaatataagccttataaatggggtaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34139376 attaacgagcaaaacccttcaaaatataagccttataaatggggtaa 34139330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 159 - 310
Target Start/End: Complemental strand, 34136348 - 34136197
Alignment:
Q  159 tcaagaaacaagaagaggagaatcttcaaatttatcattataagctaccttagagaaagatattttaataaatgtattacttagctcatgtaaacaacca 258  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||||||||||| || |||||||    
T  34136348 tcaagaaacaagatgaggagaatcttcaaatttatcattataagctacagtagagaaagatagtttaataaatgtatcacttagctcatttacacaacca 34136249  T
Q  259 aagattgatcggtgtttctgaaatgagcaactggctacagtcaaacttgcta 310  Q
    |||||||||| ||||||||||||||||  | ||||| || ||||| ||||||    
T  34136248 aagattgatcagtgtttctgaaatgagtgagtggctgcaatcaaatttgcta 34136197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 34136524 - 34136378
Alignment:
Q  10 ggagcacagagcattggtgaacaaggagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagctt 109  Q
    |||||| |||| | ||||||||||||||||||| || ||||||||||||||||| ||||| |||||| |||||  |||||||||||||||||||||||||    
T  34136524 ggagcatagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagctt 34136425  T
Q  110 attaacgagcaaaacccttcaaaatataagccttataaatggggtaa 156  Q
    |  ||  |||||||| || ||||||||||||| ||||||||||||||    
T  34136424 acaaataagcaaaactctccaaaatataagccatataaatggggtaa 34136378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 955 - 1020
Target Start/End: Complemental strand, 34137605 - 34137540
Alignment:
Q  955 atcatcatgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaactctcaatc 1020  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34137605 atcatcatgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaactctcaatc 34137540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 34142156 - 34142013
Alignment:
Q  10 ggagcacagagcattggtgaacaaggagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagctt 109  Q
    ||||||||||||  | |||| ||  ||||| ||||| ||||||||||| ||||||||   ||||||||||||   |||| |||| ||||| || ||||||    
T  34142156 ggagcacagagcgattgtgagcacagagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagctt 34142057  T
Q  110 attaacgagcaaaacccttcaaaatataagccttataaatgggg 153  Q
    || || |||||||||||||||||||||| ||| |||||||||||    
T  34142056 ataaatgagcaaaacccttcaaaatataggccatataaatgggg 34142013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 960 - 1016
Target Start/End: Complemental strand, 34133689 - 34133633
Alignment:
Q  960 catgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaactctc 1016  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  34133689 catgggagaagtggaccctgcttttgttcaagagcaagaacacagaccaaaactctc 34133633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 34141980 - 34141926
Alignment:
Q  159 tcaagaaacaagaagaggagaatcttcaaatttatcattataagctaccttagag 213  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||| |||||    
T  34141980 tcaagaaacaagatgtggagaatcttcaaatttatcattataagctaccctagag 34141926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 955 - 1016
Target Start/End: Complemental strand, 34141268 - 34141207
Alignment:
Q  955 atcatcatgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaactctc 1016  Q
    |||| ||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||    
T  34141268 atcaccatgggagaggtagacccaactttcgttcaagagctagaacacagaccaaaactctc 34141207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 582
Target Start/End: Complemental strand, 5535848 - 5535753
Alignment:
Q  486 gatcacaattataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    |||||| |||||||||||| ||| | || ||||||| ||| ||||| |||| ||||||||||||| ||| ||||| | |||||||||||| ||||||    
T  5535848 gatcactattataagcaaaaattgacttgttaggttcattcaataactgatgtatgtggtctata-tataaactacatacatcatttattgaatgaa 5535753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 491 - 582
Target Start/End: Complemental strand, 46462510 - 46462419
Alignment:
Q  491 caattataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    |||||||||||||   || | |||||||||| ||||||||| |||| ||||| |||| |||||| ||| ||| |||||||||||| ||||||    
T  46462510 caattataagcaatttttcactttttaggttcattgaataaatgatgtatgtagtctttattataaaccatatacatcatttatttaatgaa 46462419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 960 - 1013
Target Start/End: Complemental strand, 34127416 - 34127363
Alignment:
Q  960 catgggagaagtagacccagcttttgttcaagagcaagaacacagaccaaaact 1013  Q
    |||||||||| | |||  ||| ||||||||||||||||||||||||||||||||    
T  34127416 catgggagaattggacttagcatttgttcaagagcaagaacacagaccaaaact 34127363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 494 - 582
Target Start/End: Original strand, 21586931 - 21587019
Alignment:
Q  494 ttataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    |||||||||||  |||| ||||||||| |||| ||||| |||| ||||||  |||||||||  |||| | |||||||||||| ||||||    
T  21586931 ttataagcaaaagtttattttttaggtaaattcaataaatgatgtatgtgtcctatattatagactacatacatcatttattgaatgaa 21587019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 551
Target Start/End: Complemental strand, 6087566 - 6087503
Alignment:
Q  488 tcacaattataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatat 551  Q
    ||||||||||||||||| |||||||||| || || ||| ||||| |||| ||||| ||||||||    
T  6087566 tcacaattataagcaaaaatttaattttcagatttattcaataaatgatgtatgtagtctatat 6087503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 495 - 549
Target Start/End: Complemental strand, 12596802 - 12596748
Alignment:
Q  495 tataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctat 549  Q
    ||||| |||| ||||| |||||||||| ||| ||||| |||||||||||||||||    
T  12596802 tataaacaaaaatttactttttaggttcattcaataaatgatatatgtggtctat 12596748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 512 - 582
Target Start/End: Complemental strand, 23208747 - 23208677
Alignment:
Q  512 tttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    ||||||||||| |||||||| |||||||| || |||||||||| || || | |||||| |||| |||||||    
T  23208747 tttttaggttagttgaataactgatatatctgatctatattataaattaaatacatcaattatacaatgaa 23208677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 488 - 578
Target Start/End: Complemental strand, 29765797 - 29765707
Alignment:
Q  488 tcacaattataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaa 578  Q
    |||||||||||| |||| ||  | ||||||| || ||||||||||||||||||| |||||||||||| ||| ||| | |||||||||||||    
T  29765797 tcacaattataaccaaaaatcaactttttagattcattgaataagtgatatatgcggtctatattataaaccatatatatcatttattcaa 29765707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 513 - 582
Target Start/End: Complemental strand, 10099660 - 10099591
Alignment:
Q  513 ttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    ||||||||| ||| ||| | |||||||||||||||||||||| ||| | | |||||||| ||| ||||||    
T  10099660 ttttaggttcattcaattaatgatatatgtggtctatattataaaccacatacatcattaattaaatgaa 10099591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 512 - 554
Target Start/End: Complemental strand, 34565036 - 34564994
Alignment:
Q  512 tttttaggttaattgaataagtgatatatgtggtctatattat 554  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  34565036 tttttaggttaattgaataagtgatgtatgtggtctatattat 34564994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 512 - 575
Target Start/End: Original strand, 27163196 - 27163259
Alignment:
Q  512 tttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttatt 575  Q
    |||||||||| ||||||||| |||| ||||||||||||||||| ||| | | ||||||||||||    
T  27163196 tttttaggttcattgaataaatgatgtatgtggtctatattataaaccacatacatcatttatt 27163259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 582
Target Start/End: Original strand, 37491275 - 37491374
Alignment:
Q  483 tttgatcacaattataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    |||| |||| |||||||||||| ||||| ||||||| || ||| ||||| |||| ||||| |||||||| |   || ||| |||||||||||| ||||||    
T  37491275 tttggtcactattataagcaaaaatttactttttagatttattaaataaatgatgtatgtagtctatataagtgaccatatacatcatttattaaatgaa 37491374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 488 - 582
Target Start/End: Original strand, 43813132 - 43813226
Alignment:
Q  488 tcacaattataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    |||| |||||||||||| ||||||||||||| || ||| ||||| |||  ||||| ||||||| |||  || | | |||||||||||| ||||||    
T  43813132 tcactattataagcaaaaatttaatttttagattcattcaataaatgaagtatgtagtctataatattgaccacatacatcatttattgaatgaa 43813226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 488 - 553
Target Start/End: Complemental strand, 3967838 - 3967773
Alignment:
Q  488 tcacaattataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatatta 553  Q
    |||| |||||||||||| |  || |||||||||| ||||||||| |||| ||||||| ||||||||    
T  3967838 tcactattataagcaaaaaactactttttaggttcattgaataaatgatgtatgtggactatatta 3967773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 582
Target Start/End: Original strand, 6250636 - 6250701
Alignment:
Q  517 aggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    ||||| ||| ||||| ||||||||||||||||||||||  |||  | |||||||||||| ||||||    
T  6250636 aggtttattcaataaatgatatatgtggtctatattatatactgcatacatcatttattaaatgaa 6250701  T

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Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 493 - 560
Target Start/End: Original strand, 44673898 - 44673965
Alignment:
Q  493 attataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatattatcaacta 560  Q
    ||||||| |||| ||||| |||||||||| ||| ||||| ||||||||||||||||||| || |||||    
T  44673898 attataaacaaaaatttattttttaggtttatttaataaatgatatatgtggtctatataataaacta 44673965  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 493 - 551
Target Start/End: Complemental strand, 6340698 - 6340640
Alignment:
Q  493 attataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatat 551  Q
    |||||||||||| ||| | |||||||||| ||| ||||| ||||||||||||| |||||    
T  6340698 attataagcaaaaattaactttttaggttcattcaataaatgatatatgtggtttatat 6340640  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 494 - 546
Target Start/End: Complemental strand, 29204537 - 29204487
Alignment:
Q  494 ttataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtc 546  Q
    |||||||||||  |||||||||||| || ||||||||| ||||||||||||||    
T  29204537 ttataagcaaa--tttaatttttagatttattgaataaatgatatatgtggtc 29204487  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 488 - 553
Target Start/End: Original strand, 39682616 - 39682681
Alignment:
Q  488 tcacaattataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatatta 553  Q
    |||| |||||||| ||| | ||| |||||||||| ||||||||| |||| ||||||||||||||||    
T  39682616 tcactattataagtaaaaaattattttttaggttcattgaataaatgatgtatgtggtctatatta 39682681  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 582
Target Start/End: Complemental strand, 14631117 - 14631042
Alignment:
Q  507 tttaatttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    |||||||||||| || |||||||||||||| |||||||| |||||| |  |||| | | || ||||||||||||||    
T  14631117 tttaatttttagatttattgaataagtgatgtatgtggtatatattctagactacatatattatttattcaatgaa 14631042  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 582
Target Start/End: Complemental strand, 18942100 - 18942025
Alignment:
Q  507 tttaatttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    |||| |||||||||| ||| ||| | |||| ||||||||||||||||| ||| ||| |||||||| ||| ||||||    
T  18942100 tttattttttaggttcattcaattaatgatgtatgtggtctatattatgaaccatatacatcattaattgaatgaa 18942025  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 582
Target Start/End: Complemental strand, 30489184 - 30489135
Alignment:
Q  533 tgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    |||||||||||||||||||||| ||||||| |||| ||| ||| ||||||    
T  30489184 tgatatatgtggtctatattatgaactatatacataattaattaaatgaa 30489135  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 512 - 582
Target Start/End: Complemental strand, 133246 - 133176
Alignment:
Q  512 tttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    |||||||||| |||||||||   || |||||||||||||||||  |||||  |||||||||||| ||||||    
T  133246 tttttaggttcattgaataaacaatgtatgtggtctatattatagactatgtacatcatttattgaatgaa 133176  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 485 - 582
Target Start/End: Original strand, 7158260 - 7158357
Alignment:
Q  485 tgatcacaattataagcaaacatttaatttttaggttaattgaataagtgatatatgtggtctatattatcaactataaacatcatttattcaatgaa 582  Q
    ||||||||| |||||||||| || ||  |||||| || ||| ||||| |||| |||||||||| |||| |  || ||| |||||||||||| ||||||    
T  7158260 tgatcacaaatataagcaaaaatctatgttttagatttattcaataaatgatgtatgtggtctttattgtagacaatatacatcatttattgaatgaa 7158357  T

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