View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_40 (Length: 612)
Name: NF8981_low_40
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Complemental strand, 44221395 - 44220820
Alignment:
| Q |
18 |
cattaggctggtggccgacattcactgggaaaccggtggctggtggctggttgtacggttgttggaatttagaaccttgaggattcataactataata-- |
115 |
Q |
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| T |
44221395 |
cattaggctggtggccgacattcaccgggaaaccggtggctggtggctggttgtacggttgttggaatttagaaccttgaggattcataactataataat |
44221296 |
T |
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| Q |
116 |
-ctaataataatggacagtaaatgtttgtgtatagtaggatcaggaaattaggacaaagaattggttaaatatttgagggggctttggaaatatagatag |
214 |
Q |
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| T |
44221295 |
actaataataatggacagtaaatgtatgtgtatagcaggatcaggaaattaggacacagaattggttaaatatt-gagggggctttggaaatatagatag |
44221197 |
T |
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| Q |
215 |
attgattatagtggagtttgtgttatgactcaacaatttagtgtgt--atatatataagcttaaaattagaggaggcgtggaatgaatgaatggttcttc |
312 |
Q |
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| T |
44221196 |
att----atagtggagtttgtgttatgactcaacaatttagtgtgtgtatatatataagcttaaaattagaggaggcgtggaatgaatgaatggttcttc |
44221101 |
T |
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| Q |
313 |
aactggaccatgtcaatgtgccggattaattgatgcattgtatgtaacttcttggaaactatagtatgcttcattttattaattgataaaataaatatta |
412 |
Q |
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| T |
44221100 |
aactggaccatgtcaatgtgccggattaattgatgcattgtatgtaacttcttggaaactatagtatgcttcattttattaattgat-aaagaaatatta |
44221002 |
T |
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| Q |
413 |
tactaatagttacccaattaacaaggtaggttgctttgaactttcaccgtatatgcattgaatttgaatgaatcagcacaaaaatatagcatgcgacgnn |
512 |
Q |
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| T |
44221001 |
tactaataattacccaattaacaaggtaggttgctttgaactttcaccgtatatgcattgaatttgaatgaatcagcacaaaaatatagcatgcgac--- |
44220905 |
T |
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| Q |
513 |
nnnnnnnnntccttcactctattgtttccttttaattgtcttgttatcttttctttaaggctcttgttaacgagtgtccccggag |
597 |
Q |
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| T |
44220904 |
agccccctctccttgactctattgtttccttttaattgtcttgttatcttttatttaaagttcttgttaacgagtgtccccggag |
44220820 |
T |
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