View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_42 (Length: 609)
Name: NF8981_low_42
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 529; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 21 - 597
Target Start/End: Original strand, 38608907 - 38609483
Alignment:
| Q |
21 |
actgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagtta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38608907 |
actgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagtta |
38609006 |
T |
|
| Q |
121 |
aggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatatt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609007 |
aggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatatt |
38609106 |
T |
|
| Q |
221 |
aggaggtgaaggagcgtcggaaggagcaggtgttagagccggatcatctactttattagattctccaggtcaggcgacggaagaaacctgctctgctctt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609107 |
aggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggcgacggaagaaacctgctctgctctt |
38609206 |
T |
|
| Q |
321 |
gatggacgtggtggttgtgctgctggagtcactactacagcaggtgtgtctcccatgcctgaggtcaagccaatggttgagattgaagatcaccatggcc |
420 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609207 |
gatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcc |
38609306 |
T |
|
| Q |
421 |
tgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctattaaatttgtagttaataagtttacagttac |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38609307 |
tgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttacagttac |
38609406 |
T |
|
| Q |
521 |
actgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctctgtgct |
597 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
38609407 |
actgttgttcatgtactaaagtgaaactctgaatttgtagttaactcgcattgttgtttagtttgtggctttgtgct |
38609483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 21 - 597
Target Start/End: Original strand, 38793690 - 38794266
Alignment:
| Q |
21 |
actgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagtta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38793690 |
actgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagtta |
38793789 |
T |
|
| Q |
121 |
aggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatatt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793790 |
aggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatatt |
38793889 |
T |
|
| Q |
221 |
aggaggtgaaggagcgtcggaaggagcaggtgttagagccggatcatctactttattagattctccaggtcaggcgacggaagaaacctgctctgctctt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793890 |
aggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggcgacggaagaaacctgctctgctctt |
38793989 |
T |
|
| Q |
321 |
gatggacgtggtggttgtgctgctggagtcactactacagcaggtgtgtctcccatgcctgaggtcaagccaatggttgagattgaagatcaccatggcc |
420 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793990 |
gatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcc |
38794089 |
T |
|
| Q |
421 |
tgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctattaaatttgtagttaataagtttacagttac |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38794090 |
tgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttacagttac |
38794189 |
T |
|
| Q |
521 |
actgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctctgtgct |
597 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
38794190 |
actgttgttcatgtactaaagtgaaactctgaatttgtagttaactcgcattgttgtttagtttgtggctttgtgct |
38794266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 21 - 515
Target Start/End: Complemental strand, 38121216 - 38120719
Alignment:
| Q |
21 |
actgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagtta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38121216 |
actgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagtta |
38121117 |
T |
|
| Q |
121 |
aggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38121116 |
aggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatctt |
38121017 |
T |
|
| Q |
221 |
aggaggtgaaggagcgtcggaaggagcaggtgttagagccggatcatctactttattagattctccaggtcaggcgacggaagaaacctgctctgctctt |
320 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||| || | ||||| ||| ||||||| | |||||||| |||||||||||||||||||||| | |
|
|
| T |
38121016 |
aggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggccacggaagaaacctgctctgctcct |
38120917 |
T |
|
| Q |
321 |
gatggacgtggtggttgtgctgctggagtcactactacagcaggtgtgtctcccatgcctgaggtcaagccaatggttgagattgaagatcaccatggcc |
420 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38120916 |
gatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcc |
38120817 |
T |
|
| Q |
421 |
tgtgagtgcgatgcttcgatgatg---atgaagattgcggtttagttctttctctgctgaagtgaatctctattaaatttgtagttaataagtttaca |
515 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38120816 |
tgtgagtgcgatgcttcgatgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttaca |
38120719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 360 - 470
Target Start/End: Original strand, 34592844 - 34592957
Alignment:
| Q |
360 |
gcaggtgtgtctcccatgcctgaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgcg |
456 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
34592844 |
gcaggtgtgtctcccgtgcctcgggtcaggccaatggttgagattgaagatcaccatggcctgtgagtgtgatgcttcaatgatgatgatgaagattgcg |
34592943 |
T |
|
| Q |
457 |
gtttagttctttct |
470 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
34592944 |
gtttacttctttct |
34592957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 538 - 597
Target Start/End: Original strand, 34592970 - 34593029
Alignment:
| Q |
538 |
aaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctctgtgct |
597 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
34592970 |
aaagtgaaactctgaatttgtagttaacttgcattgttgtttagtttgtggctttgtgct |
34593029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 504
Target Start/End: Original strand, 38287450 - 38287498
Alignment:
| Q |
456 |
ggtttagttctttctctgctgaagtgaatctctattaaatttgtagtta |
504 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
38287450 |
ggtttacttctttttctgctgaagtgaaactctatgaaacttgtagtta |
38287498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 575
Target Start/End: Original strand, 38609502 - 38609538
Alignment:
| Q |
539 |
aagtgaaactctgaatttgtagttaactcacattgtt |
575 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38609502 |
aagtgaaactttgaatttgtagttaattcacattgtt |
38609538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 575
Target Start/End: Original strand, 38794285 - 38794321
Alignment:
| Q |
539 |
aagtgaaactctgaatttgtagttaactcacattgtt |
575 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38794285 |
aagtgaaactttgaatttgtagttaattcacattgtt |
38794321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 21 - 515
Target Start/End: Complemental strand, 28730790 - 28730296
Alignment:
| Q |
21 |
actgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagtta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| || || | |
|
|
| T |
28730790 |
actgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtgacattagcaccgatgaggattaactatgttagggtga |
28730691 |
T |
|
| Q |
121 |
aggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatatt |
220 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
28730690 |
aggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctattgcggatgcttatgatactatctt |
28730591 |
T |
|
| Q |
221 |
aggaggtgaaggagcgtcggaaggagcaggtgttagagccggatcatctactttattagattctccaggtcaggcgacggaagaaacctgctctgctctt |
320 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| || | ||||| ||| ||||||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
28730590 |
aggaggtgaaggagcatcggaaggagcaggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgactgaagaaacctgctctgctctt |
28730491 |
T |
|
| Q |
321 |
gatggacgtggtggttgtgctgctggagtcactactacagcaggtgtgtctcccatgcctgaggtcaagccaatggttgagattgaagatcaccatggcc |
420 |
Q |
| |
|
||||| |||||||| |||||||||| |||||| || || |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
28730490 |
gatgggcgtggtggctgtgctgctgatgtcactgctgcaacaggtgtgtctcccatgcctcaggtcaggccaatgtttgagattgaagatcaccatggcc |
28730391 |
T |
|
| Q |
421 |
tgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctattaaatttgtagttaataagtttaca |
515 |
Q |
| |
|
|||||||| |||| || ||| |||| |||||||||| |||| |||||||||||||||||| || || ||| |||||||||||||||||||||||| |
|
|
| T |
28730390 |
tgtgagtgtgatggtttgatcatgacgaagattgcgatttacttctttctctgctgaagtaaaactatatgaaatttgtagttaataagtttaca |
28730296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 402 - 598
Target Start/End: Original strand, 33078483 - 33078658
Alignment:
| Q |
402 |
attgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctattaaatttg |
498 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
33078483 |
attgaagatcaccatgggctgtgactgcgatgcttcaatgatgatgatgaagatcgcggtttacttctttctctg------------------aaatttg |
33078564 |
T |
|
| Q |
499 |
tagttaataagtttacagttacactgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctctgtgctc |
598 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
33078565 |
tagttaataagtttac------actgttgttcatgtacaaaagtgaaactctgaatttgtagttaactcgcattgttgtttagtttgtggctttgtgctc |
33078658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 18224426 - 18224363
Alignment:
| Q |
131 |
cgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcct |
194 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||| ||||| ||||| ||||| |||||| |
|
|
| T |
18224426 |
cgtcatccgcaacgtcaagatcgtcgtgcacagtgtgtacttgccatttccacatattaatcct |
18224363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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