View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_45 (Length: 599)
Name: NF8981_low_45
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 7e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 16978963 - 16978772
Alignment:
| Q |
9 |
agtttggtgttcataagtgatgttttcctcatatagtttggcgccagttacacgtctctctttctctttgctctatttgtgttacacaccaatgtctgat |
108 |
Q |
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| T |
16978963 |
agtttggtgttcataagtgaggttttcctcatatagtttggcgccagttacacgtctctctttctctttgctctatttgtgttacacaccaatgtctgat |
16978864 |
T |
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| Q |
109 |
tctttttctatttccatgtttttatagtatttcattacatcactttcctaacattaaacttcatcatccttagacaacactttttctctctc |
200 |
Q |
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| T |
16978863 |
tctttttctatttacatgtttttatagtatttcattacatcactttcctaacattaaacttcatcatccttagacaacactctttctctctc |
16978772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 385 - 573
Target Start/End: Complemental strand, 16978599 - 16978411
Alignment:
| Q |
385 |
aatggctagtgtttcaagcagaactcgaagcaagaatgttccattgttccgctgtcttccagtgaaatcgaagcggctaagaaagagtgatgaagatgat |
484 |
Q |
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| T |
16978599 |
aatggctagtgtttcaagcagaactcgaagcaagaatgttccattgttccgttgtcttccactgaaatcgaagcggctaagaaagagtgatgaagatgat |
16978500 |
T |
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| Q |
485 |
atgggtttggatcattatgtttctcgttgtaagagaatgaaggtaaaaagagaaacttttgttcttcctaagaatgttaaggttatttc |
573 |
Q |
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| T |
16978499 |
atgggtttggatcactatgtttctcgttgtaagaaaatgaaggtaaaaagagaaacttttgttcttcctaagaatgttaaagttatttc |
16978411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 385 - 480
Target Start/End: Complemental strand, 16969461 - 16969366
Alignment:
| Q |
385 |
aatggctagtgtttcaagcagaactcgaagcaagaatgttccattgttccgctgtcttccagtgaaatcgaagcggctaagaaagagtgatgaaga |
480 |
Q |
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| T |
16969461 |
aatggctggtatttctagcagaactcgtagcaaaaatgttccattgtttggttgtcttcctccgaaatcgaagcggcgaagaaagagtgatgaaga |
16969366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 16978683 - 16978651
Alignment:
| Q |
301 |
aagtactaacatataacagagaaagaacaacgt |
333 |
Q |
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| T |
16978683 |
aagtactaacatataacagagaaagaacaacgt |
16978651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 35262164 - 35262210
Alignment:
| Q |
386 |
atggctagtgtttcaagcagaactcgaagcaagaatgttccattgtt |
432 |
Q |
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| T |
35262164 |
atggctggtgtttctagcagaactcgtagcaagaatgttccgttgtt |
35262210 |
T |
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