View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_47 (Length: 597)

Name: NF8981_low_47
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_47
NF8981_low_47
[»] chr4 (19 HSPs)
chr4 (20-593)||(6839441-6840013)
chr4 (38-197)||(6755278-6755431)
chr4 (330-447)||(28031523-28031640)
chr4 (331-379)||(2536983-2537031)
chr4 (331-408)||(9034943-9035020)
chr4 (330-379)||(12274267-12274316)
chr4 (331-408)||(26006089-26006166)
chr4 (364-452)||(652912-653000)
chr4 (92-136)||(6817385-6817429)
chr4 (331-379)||(22359245-22359293)
chr4 (198-249)||(6755637-6755688)
chr4 (331-408)||(26429196-26429273)
chr4 (331-408)||(35853217-35853294)
chr4 (330-374)||(19396169-19396213)
chr4 (330-408)||(54552663-54552741)
chr4 (331-408)||(17423826-17423903)
chr4 (342-379)||(25058319-25058356)
chr4 (331-379)||(33846395-33846443)
chr4 (331-379)||(52759131-52759179)
[»] chr3 (10 HSPs)
chr3 (331-493)||(51951909-51952071)
chr3 (331-408)||(8457955-8458032)
chr3 (335-415)||(19396808-19396888)
chr3 (331-379)||(26400263-26400311)
chr3 (331-379)||(39383539-39383587)
chr3 (339-379)||(43018367-43018407)
chr3 (401-492)||(7514969-7515060)
chr3 (424-487)||(31637603-31637666)
chr3 (320-405)||(7622696-7622781)
chr3 (331-375)||(51191876-51191920)
[»] chr1 (9 HSPs)
chr1 (360-473)||(31592302-31592415)
chr1 (336-386)||(11080021-11080071)
chr1 (351-446)||(33816839-33816934)
chr1 (351-446)||(33876309-33876404)
chr1 (498-553)||(45309101-45309156)
chr1 (342-379)||(26347429-26347466)
chr1 (328-432)||(3295287-3295391)
chr1 (424-487)||(35322353-35322416)
chr1 (330-379)||(25070829-25070878)
[»] chr5 (8 HSPs)
chr5 (331-408)||(36978765-36978842)
chr5 (331-493)||(29242112-29242274)
chr5 (331-375)||(16007136-16007180)
chr5 (424-487)||(33305027-33305090)
chr5 (330-379)||(4052929-4052978)
chr5 (330-379)||(39861013-39861062)
chr5 (331-379)||(9609506-9609554)
chr5 (331-379)||(30796802-30796850)
[»] scaffold0450 (1 HSPs)
scaffold0450 (331-407)||(5350-5426)
[»] scaffold0200 (1 HSPs)
scaffold0200 (330-408)||(26941-27019)
[»] chr7 (11 HSPs)
chr7 (331-404)||(40187421-40187494)
chr7 (334-493)||(3962301-3962460)
chr7 (331-409)||(4595034-4595112)
chr7 (331-493)||(25611367-25611529)
chr7 (361-435)||(34899100-34899174)
chr7 (331-408)||(9360800-9360877)
chr7 (331-379)||(8150859-8150907)
chr7 (339-409)||(5866274-5866344)
chr7 (331-408)||(6596204-6596281)
chr7 (339-408)||(23362347-23362416)
chr7 (331-379)||(14160551-14160599)
[»] chr2 (10 HSPs)
chr2 (339-408)||(22605976-22606045)
chr2 (331-382)||(23769779-23769830)
chr2 (339-493)||(10213791-10213945)
chr2 (443-488)||(26999276-26999321)
chr2 (395-446)||(16349529-16349580)
chr2 (443-489)||(26423240-26423286)
chr2 (331-408)||(11616689-11616766)
chr2 (331-408)||(45085989-45086066)
chr2 (351-447)||(32025539-32025635)
chr2 (366-422)||(38284367-38284423)
[»] scaffold0552 (1 HSPs)
scaffold0552 (92-136)||(6404-6448)
[»] chr8 (9 HSPs)
chr8 (331-379)||(32282847-32282895)
chr8 (321-432)||(26006771-26006882)
chr8 (331-493)||(5839738-5839900)
chr8 (339-409)||(36531193-36531263)
chr8 (331-408)||(11503073-11503150)
chr8 (316-389)||(31037689-31037762)
chr8 (331-408)||(32578109-32578186)
chr8 (331-408)||(25663563-25663640)
chr8 (331-375)||(10631232-10631276)
[»] scaffold0011 (1 HSPs)
scaffold0011 (331-410)||(58456-58535)
[»] scaffold0360 (1 HSPs)
scaffold0360 (330-379)||(5315-5364)
[»] scaffold0279 (1 HSPs)
scaffold0279 (331-408)||(6771-6848)
[»] scaffold0016 (1 HSPs)
scaffold0016 (331-408)||(187184-187261)
[»] chr6 (9 HSPs)
chr6 (339-380)||(7608564-7608605)
chr6 (443-488)||(34701311-34701356)
chr6 (331-502)||(32957402-32957573)
chr6 (339-408)||(7435628-7435697)
chr6 (331-408)||(34183125-34183202)
chr6 (331-379)||(6192630-6192678)
chr6 (339-375)||(12523681-12523717)
chr6 (331-375)||(29025240-29025284)
chr6 (339-375)||(31797988-31798024)
[»] scaffold0577 (1 HSPs)
scaffold0577 (339-408)||(2211-2280)
[»] scaffold0201 (1 HSPs)
scaffold0201 (331-375)||(20721-20765)


Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 20 - 593
Target Start/End: Original strand, 6839441 - 6840013
Alignment:
Q  20 actaggggattagtattgtacaccctatgtacttttagttgtacttgatcttttttcttatgatatcagtagtttattcataccaatttcagtgttctat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6839441 actaggggattagtattgtacaccctatgtacttttagttgtacttgatcttttttcttatgatatcagtagtttattcataccaatttcagtgttctat 6839540  T
Q  120 cgttatatgaattcttagttcttactattttgtatatccaagttcgaattgaatttagaattcatttcgttgttctgtccatcttggttcaattatgtca 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6839541 cgttatatgaattcttagttcttactattttgtatatccaaattcgaattgaatttagaattcatttcgttgttctgtccatcttggttcaattatgtca 6839640  T
Q  220 cagatttcgtactgctaaccagttaggtaataattctaattgattaacatcaacttttatgttaaacttattaattaagtgttgggtataattatgtttg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  6839641 cagatttcgtactgctaaccagttaggtaataattctaattgattaacatcaacttt-attttaaacttattaattaagtgttgggtataattatgtttg 6839739  T
Q  320 tttacataagaaaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctacc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  6839740 tttacataagaaaacttagtgcattttattcataataatcgtagagataaaagatggaattctaataaaaatgtggaaactagcatgacatggagctacc 6839839  T
Q  420 ctatctaaactatgagcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatcagaagcgagtagacgattgtagtcattgataa 519  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6839840 ctatctaaactatgagcaatttcattggattgtcttctaatgaactttacatcagagttcactaaatcagaagcgagtagacgattgtagtcattgataa 6839939  T
Q  520 ttgcactaaagtcagaaacaccatgcttattaccgtagatgttctaaactactattttggagtcggcattgacc 593  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6839940 ttgcactaaagtcagaaacaccatgcttattaccgtagatgttctaaactactattttggagtccgcattgacc 6840013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 6755278 - 6755431
Alignment:
Q  38 tacaccctatgtacttttagttgtacttgatctttttt---cttatgatatcagtagtttattcataccaatttcagtgttctatcgttatatgaattct 134  Q
    ||||||| |||| ||||||||||||||||| |||||||   |||||||||||||| |||||| |||||||||||||||||||||| ||||| ||| ||||    
T  6755278 tacaccccatgtccttttagttgtacttgaactttttttgtcttatgatatcagttgtttatgcataccaatttcagtgttctattgttatctgatttct 6755377  T
Q  135 tagttcttactattttgtatatccaagttcgaattgaatttagaattcatttcgttgttctgt 197  Q
    ||  |   ||| ||       ||||| ||||||||||||||||||||||||||||||||||||    
T  6755378 ta--ttaaactgtt-------tccaaattcgaattgaatttagaattcatttcgttgttctgt 6755431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 447
Target Start/End: Complemental strand, 28031640 - 28031523
Alignment:
Q  330 aaaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaac 429  Q
    |||||||| | ||||||||| | |||||  |||||||||||||||| ||||   || |||||  ||||| ||||||||||||||| || |||| ||||||    
T  28031640 aaaacttaatacattttatttaaaataaaagtagagatacaagatgaaatttgaatgaaaatacgaaaactagcatgacatggagttatcctagctaaac 28031541  T
Q  430 tatgagcaatttcattgg 447  Q
    ||||| ||| ||||||||    
T  28031540 tatgatcaacttcattgg 28031523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 2536983 - 2537031
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  2536983 aaacttattgcattttattcataataatagtagagatacaagatggaat 2537031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 9035020 - 9034943
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  9035020 aaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 9034943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 12274316 - 12274267
Alignment:
Q  330 aaaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  12274316 aaaacttattgcatttcattcataataatagtagagatacaagatggaat 12274267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 26006089 - 26006166
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  26006089 aaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 26006166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 452
Target Start/End: Complemental strand, 653000 - 652912
Alignment:
Q  364 agatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaactatgagcaatttcattggattgt 452  Q
    |||||||  |||||||||  |||||||| || |||  ||||||||||  || ||||||| ||||||||||||||| |||||||||||||    
T  653000 agatacattatggaattcaaataaaaatatggaaacaagcatgacattaagttaccctagctaaactatgagcaacttcattggattgt 652912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 6817385 - 6817429
Alignment:
Q  92 tttattcataccaatttcagtgttctatcgttatatgaattctta 136  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||    
T  6817385 tttattcataccagtttcagtgttctatcgttatttgaattctta 6817429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 22359245 - 22359293
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  22359245 aaacttattgcatttcattcataataatagtagagatacaagatggaat 22359293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 6755637 - 6755688
Alignment:
Q  198 ccatcttggttcaattatgtcacagatttcgtactgctaaccagttaggtaa 249  Q
    ||||||||||||||| ||||||| ||||| |||||||||| |||||||||||    
T  6755637 ccatcttggttcaatgatgtcactgattttgtactgctaatcagttaggtaa 6755688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 26429196 - 26429273
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| ||||| |||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  26429196 aaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 26429273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 35853294 - 35853217
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| ||||| |||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  35853294 aaacttattgcatttaattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 35853217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 19396169 - 19396213
Alignment:
Q  330 aaaacttagtgcattttattcataataatcgtagagatacaagat 374  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||    
T  19396169 aaaacttattgcatttcattcataataatagtagagatacaagat 19396213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 54552741 - 54552663
Alignment:
Q  330 aaaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    |||||||| ||||||| |||||||||||| | | |||||||||| ||||| ||||||  ||| |||||  |||||||||    
T  54552741 aaaacttattgcatttcattcataataatagcaaagatacaagaaggaatcctgatatgaatatgaaatctagcatgac 54552663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 17423826 - 17423903
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| || |||| |||||| ||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  17423826 aaacttattgaatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 17423903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 25058319 - 25058356
Alignment:
Q  342 attttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  25058319 attttattcataataatagtagagatacaagattgaat 25058356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 33846443 - 33846395
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| ||||||| ||||| |||||| ||||| ||||||||||||||    
T  33846443 aaacttattgcatttcattcagaataatagtagaaatacaagatggaat 33846395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 52759131 - 52759179
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| ||||||| |||||||||||| ||| ||||||| ||||||||    
T  52759131 aaacttattgcatttcattcataataatagtatagatacacgatggaat 52759179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 331 - 493
Target Start/End: Complemental strand, 51952071 - 51951909
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaact 430  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||| || |||  ||| |||||| ||||||||| |  ||| || ||| | |||||    
T  51952071 aaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatatgaatatgaaaactagcatgacgtaaagccactctagcaaaact 51951972  T
Q  431 atgagcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatcagaagc 493  Q
    |||||| | |||||||| |||| ||| ||| ||| | | ||||||| | ||||||||||||||    
T  51951971 atgagcgaattcattggcttgtcttcgaataaacctaacatcagaggttactaaatcagaagc 51951909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 8458032 - 8457955
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||| ||| || |||  ||| |||||| |||||||||    
T  8458032 aaacttattgcatttcattcataataatagtagagatacaagatgaaatcctaatatgaatatgaaaactagcatgac 8457955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 19396888 - 19396808
Alignment:
Q  335 ttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagc 415  Q
    ||||||||||  |||||||||||| || |||||||||||||||||||  |||||| |  | ||| |||||||| |||||||    
T  19396888 ttagtgcattacattcataataattgttgagatacaagatggaattcgaataaaagtacggaaactagcatgatatggagc 19396808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 26400311 - 26400263
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| ||||||| |||||||||||| |||||||||||| |||||||    
T  26400311 aaacttattgcatttcattcataataatagtagagatacaatatggaat 26400263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 39383587 - 39383539
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| ||||||| |||||||||||| |||||||||||| |||||||    
T  39383587 aaacttattgcatttcattcataataatagtagagatacaaaatggaat 39383539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 43018367 - 43018407
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| |||||||||||| ||||||||||||||||||||    
T  43018367 tgcatttcattcataataatagtagagatacaagatggaat 43018407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 492
Target Start/End: Complemental strand, 7515060 - 7514969
Alignment:
Q  401 agcatgacatggagctaccctatctaaactatgagcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatcagaag 492  Q
    |||||||| |||||||| |||| ||||||||||||||| |||| ||  |||| | ||||| ||| |||||| |||| | ||||||| |||||    
T  7515060 agcatgacgtggagctagcctagctaaactatgagcaacttcagtgacttgtctcctaataaacctcatataagaggttactaaatgagaag 7514969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 487
Target Start/End: Complemental strand, 31637666 - 31637603
Alignment:
Q  424 ctaaactatgagcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatc 487  Q
    |||||||||||||||   |||||  |||| | ||||||||||||| ||||||||||||||||||    
T  31637666 ctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatc 31637603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 7622781 - 7622696
Alignment:
Q  320 tttacataagaaaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcat 405  Q
    |||||| || |||| ||| ||||||| ||| |||||||| |||||||||||||||| ||| || |||  ||| |||||| ||||||    
T  7622781 tttacaaaaaaaaatttattgcatttcatttataataatagtagagatacaagatgaaatcctaatatgaatatgaaaactagcat 7622696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 51191876 - 51191920
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatg 375  Q
    ||||||| ||||||| |||||||||||| ||| ||||||||||||    
T  51191876 aaacttattgcatttcattcataataatagtacagatacaagatg 51191920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 360 - 473
Target Start/End: Complemental strand, 31592415 - 31592302
Alignment:
Q  360 gtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaactatgagcaatttcattggattgttttctaa 459  Q
    ||||||||||||||||||||||  || |||||  | ||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |||| | ||||    
T  31592415 gtagagatacaagatggaattcgaatgaaaatacggaaactagcatgacatggagctaccctagctaaactatgagcaacttcattggcttgtctcctaa 31592316  T
Q  460 tgaacttcatatca 473  Q
    | ||| ||| ||||    
T  31592315 taaacctcacatca 31592302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 11080071 - 11080021
Alignment:
Q  336 tagtgcattttattcataataatcgtagagatacaagatggaattctgata 386  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  11080071 tagtgcatttcatttataataatcgtagagatacaagatggaatcctgata 11080021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 446
Target Start/End: Complemental strand, 33816934 - 33816839
Alignment:
Q  351 ataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaactatgagcaatttcattg 446  Q
    |||||||  ||||||||||| ||| | |||   |||||| | |||||| |||||||||||| | ||||| || |||||||||||||||||||||||    
T  33816934 ataataagagtagagatacatgataggatttgaataaaattatgaaaactagcatgacatgaatctaccttaactaaactatgagcaatttcattg 33816839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 446
Target Start/End: Complemental strand, 33876404 - 33876309
Alignment:
Q  351 ataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaactatgagcaatttcattg 446  Q
    |||||||  ||||||||||| ||| | |||   |||||| | |||||| |||||||||||| | ||||| || |||||||||||||||||||||||    
T  33876404 ataataagagtagagatacatgataggatttgaataaaattatgaaaactagcatgacatgaatctaccttaactaaactatgagcaatttcattg 33876309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 498 - 553
Target Start/End: Complemental strand, 45309156 - 45309101
Alignment:
Q  498 agacgattgtagtcattgataattgcactaaagtcagaaacaccatgcttattacc 553  Q
    ||||| ||| ||||||| |||||||||||||| |||||||||||||||||| ||||    
T  45309156 agacgtttgcagtcattaataattgcactaaaatcagaaacaccatgcttaatacc 45309101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 26347466 - 26347429
Alignment:
Q  342 attttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  26347466 attttattcataataatagtagagatacaagatggaat 26347429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 432
Target Start/End: Original strand, 3295287 - 3295391
Alignment:
Q  328 agaaaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaa 427  Q
    |||||||||| ||||||||||| | || ||  |||||||||||||||| |||||  || ||||| || || ||||| ||||||| | ||||||||  |||    
T  3295287 agaaaacttaatgcattttatttaaaacaagagtagagatacaagatgaaattcgaatgaaaatatggaagttagcgtgacatgaaactaccctagataa 3295386  T
Q  428 actat 432  Q
    |||||    
T  3295387 actat 3295391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 487
Target Start/End: Complemental strand, 35322416 - 35322353
Alignment:
Q  424 ctaaactatgagcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatc 487  Q
    |||||||||||||||   |||||  |||| | ||||||||||||| ||||||||||||||||||    
T  35322416 ctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatc 35322353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 25070829 - 25070878
Alignment:
Q  330 aaaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    |||| ||| ||||||| |||||||||||| ||||||||| ||||||||||    
T  25070829 aaaatttattgcatttcattcataataatggtagagatataagatggaat 25070878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 36978842 - 36978765
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||| || ||| |||| |||||| |||||||||    
T  36978842 aaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatataaatatgaaaactagcatgac 36978765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 493
Target Start/End: Original strand, 29242112 - 29242274
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaact 430  Q
    ||||||| ||||||| ||||| |||||| |||||||||||| ||||||| || ||| |||| || ||| ||||||||  |  ||| || ||| | || ||    
T  29242112 aaacttattgcatttcattcaaaataatagtagagatacaatatggaatcctaatataaatatggaaactagcatgatgtaaagccactctagcaaagct 29242211  T
Q  431 atgagcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatcagaagc 493  Q
    |||||| | |||||||| |||| | | ||||||| | | ||||||| | ||||| ||||||||    
T  29242212 atgagcgacttcattggcttgtctccgaatgaacctaacatcagaggttactaagtcagaagc 29242274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 16007136 - 16007180
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatg 375  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||    
T  16007136 aaacttattgcatttcattcataataatagtagagatacaagatg 16007180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 487
Target Start/End: Original strand, 33305027 - 33305090
Alignment:
Q  424 ctaaactatgagcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatc 487  Q
    |||||||||||||||   |||||  |||| | ||||||||||||| ||||||||||||||||||    
T  33305027 ctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatc 33305090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 4052978 - 4052929
Alignment:
Q  330 aaaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    |||| ||| ||||||| |||||||||||| ||||||||| ||||||||||    
T  4052978 aaaatttattgcatttcattcataataatggtagagatataagatggaat 4052929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 39861062 - 39861013
Alignment:
Q  330 aaaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||| ||||    
T  39861062 aaaacttattgcatttctttcataataatagtagagatacaagattgaat 39861013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 9609506 - 9609554
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| ||||||| || || |||||| ||||||||||||||||||||    
T  9609506 aaacttattgcatttcatacaaaataatagtagagatacaagatggaat 9609554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 30796802 - 30796850
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| ||||||| ||||| |||||| |||||||| |||||||||||    
T  30796802 aaacttattgcatttcattcaaaataatagtagagatgcaagatggaat 30796850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 5426 - 5350
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatga 407  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||||| | |||  ||| || ||||||||||||    
T  5426 aaacttattgcatttcattcataataatagtagagatacaagatggaattttaatatgaatatggaaattagcatga 5350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 26941 - 27019
Alignment:
Q  330 aaaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    |||||||| ||||||| |||||||||||| | |||||||||||||| |||||| |||  ||| |||||| |||||||||    
T  26941 aaaacttattgcatttcattcataataatagcagagatacaagatgaaattctaatatgaatatgaaaactagcatgac 27019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 40187494 - 40187421
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagca 404  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||| || |||  ||| |||||| |||||    
T  40187494 aaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatatgaatatgaaaactagca 40187421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 493
Target Start/End: Original strand, 3962301 - 3962460
Alignment:
Q  334 cttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaactatg 433  Q
    |||| ||||||| ||||| |||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    ||| || ||| | || |||||    
T  3962301 cttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatacgaatatggaaactagcatgacgcaaagccactctagcaaagctatg 3962400  T
Q  434 agcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatcagaagc 493  Q
    ||||| ||| |||| |||| | | ||||||| | | ||||||| | ||||||||||||||    
T  3962401 agcaacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagc 3962460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 409
Target Start/End: Original strand, 4595034 - 4595112
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgaca 409  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||| ||| || |||  ||| || ||| ||||||||||    
T  4595034 aaacttattgcatttcattcataataatagtagagatacaagatgaaatcctaatatgaatatggaaactagcatgaca 4595112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 493
Target Start/End: Original strand, 25611367 - 25611529
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaact 430  Q
    ||||||| ||||||| ||||| |||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    ||| || ||| | || ||    
T  25611367 aaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctagcaaagct 25611466  T
Q  431 atgagcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatcagaagc 493  Q
    |||||| | ||| |||| |||| | | ||||||| | | ||||||| | ||||||||||||||    
T  25611467 atgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagc 25611529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 34899174 - 34899100
Alignment:
Q  361 tagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaactatgag 435  Q
    |||||||||||||||||||||  || |||||   |||| || |||||||||||||||| ||| ||||||||||||    
T  34899174 tagagatacaagatggaattcaaatgaaaatacaaaaactaacatgacatggagctacgctagctaaactatgag 34899100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 9360877 - 9360800
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| || |||| |||||||||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  9360877 aaacttattgtatttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 9360800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 8150859 - 8150907
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| | ||||| |||||||||||| ||||||||||||||||||||    
T  8150859 aaacttattacatttcattcataataatagtagagatacaagatggaat 8150907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 5866344 - 5866274
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgaca 409  Q
    ||||||| |||||||||||| |||||||||||||||| ||| || |||  ||| || |||||| |||||||    
T  5866344 tgcatttcattcataataatagtagagatacaagatgaaatcctaatatgaatatggaaattaacatgaca 5866274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 6596281 - 6596204
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| ||||| |||||| ||||| |||||||||||||| || |||  ||| || ||| |||||||||    
T  6596281 aaacttattgcatttcattcaaaataatagtagatatacaagatggaatcctaatatgaatatggaaactagcatgac 6596204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 23362416 - 23362347
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||| |||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  23362416 tgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 23362347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 14160599 - 14160551
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| ||||||| ||||| |||||| |||||||||||||| |||||    
T  14160599 aaacttattgcatttcattcaaaataatagtagagatacaagaaggaat 14160551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 22606045 - 22605976
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| |||||||||||| |||||||||||||||||||| || |||  ||| |||||| |||||||||    
T  22606045 tgcatttcattcataataattgtagagatacaagatggaatcctaatatgaatatgaaaactagcatgac 22605976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 23769779 - 23769830
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattct 382  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||| |||||||    
T  23769779 aaacttattgcatttcattcataataatagtagagatacaagatagaattct 23769830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 493
Target Start/End: Complemental strand, 10213945 - 10213791
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaactatgagcaa 438  Q
    ||||||| |||||||||||| |||||||||||||||| |||  | |||  ||| || ||| |||||||||  | ||| |||||| | ||||||||||| |    
T  10213945 tgcatttcattcataataatagtagagatacaagatgaaatcttaatatgaatatggaaactagcatgacgcgaagccaccctagcaaaactatgagcga 10213846  T
Q  439 tttcattggattgttttctaatgaacttcatatcagagttcactaaatcagaagc 493  Q
     ||| |||| |||| | | ||| ||| | | ||||||| | ||||||||||||||    
T  10213845 cttcgttggtttgtctccgaataaacctaacatcagaggttactaaatcagaagc 10213791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 26999276 - 26999321
Alignment:
Q  443 attggattgttttctaatgaacttcatatcagagttcactaaatca 488  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||    
T  26999276 attggcttgtcttctaatgaacttcaaatcagagttcactaaatca 26999321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 446
Target Start/End: Original strand, 16349529 - 16349580
Alignment:
Q  395 aaaattagcatgacatggagctaccctatctaaactatgagcaatttcattg 446  Q
    |||| |||||||| ||| |||||| ||||||||||||||||||| |||||||    
T  16349529 aaaactagcatgatatgaagctactctatctaaactatgagcaacttcattg 16349580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 489
Target Start/End: Complemental strand, 26423286 - 26423240
Alignment:
Q  443 attggattgttttctaatgaacttcatatcagagttcactaaatcag 489  Q
    ||||| |||| | ||||||||||||| ||||||||||||||||||||    
T  26423286 attggcttgtctcctaatgaacttcacatcagagttcactaaatcag 26423240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 11616766 - 11616689
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| ||||| |||||| ||||||||||||||| |||| || |||  ||| || ||| |||||||||    
T  11616766 aaacttattgcatttcattcaaaataatagtagagatacaagatagaatcctaatatgaatatggaaactagcatgac 11616689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 45085989 - 45086066
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| | ||||| |||||||||||| ||||||||| |||||||||| || |||  ||| || ||| |||||||||    
T  45085989 aaacttatttcatttcattcataataatagtagagatataagatggaatcctaatatgaatatggaaactagcatgac 45086066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 447
Target Start/End: Complemental strand, 32025635 - 32025539
Alignment:
Q  351 ataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaactatgagcaatttcattgg 447  Q
    |||||||| ||||||||| || ||| |||||| ||| |||| || ||| |||||||||||| ||  || ||| | || |||||||||| ||||||||    
T  32025635 ataataattgtagagatataacatgaaattctaatataaatatggaaactagcatgacatgaagtcactctagcaaagctatgagcaacttcattgg 32025539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 38284423 - 38284367
Alignment:
Q  366 atacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctacccta 422  Q
    ||||||||| |||||   |||||||| ||||||  ||||||||||||||||||||||    
T  38284423 atacaagattgaatttaaataaaaatatgaaaacgagcatgacatggagctacccta 38284367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 6448 - 6404
Alignment:
Q  92 tttattcataccaatttcagtgttctatcgttatatgaattctta 136  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||    
T  6448 tttattcataccagtttcagtgttctatcgttatttgaattctta 6404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 32282847 - 32282895
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  32282847 aaacttattgcatttcattcataataatagtagagatacaagatggaat 32282895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 321 - 432
Target Start/End: Original strand, 26006771 - 26006882
Alignment:
Q  321 ttacataagaaaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccc 420  Q
    ||||| ||||||||||| ||||||| ||| | |||||  |||||||| |||||||||||||  || |||||    ||||  ||||||||||||||||||     
T  26006771 ttacaaaagaaaacttaatgcatttcatttaaaataagagtagagatgcaagatggaattcaaatgaaaatacataaatcggcatgacatggagctacca 26006870  T
Q  421 tatctaaactat 432  Q
    || |||||||||    
T  26006871 tagctaaactat 26006882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 493
Target Start/End: Complemental strand, 5839900 - 5839738
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaact 430  Q
    ||||||| ||||||| |||||| ||||| |||||||||||||||| |||||| |||  ||| || ||| |||||||||    ||| || ||| | || ||    
T  5839900 aaacttattgcatttcattcatgataatagtagagatacaagatgaaattctaatattaatatggaaactagcatgacgcaaagccactctagcaaagct 5839801  T
Q  431 atgagcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatcagaagc 493  Q
    |||||| | ||| |||| |||| | | ||||||| | | ||||||| | ||||||||||||||    
T  5839800 atgagcgacttcgttggcttgtctccaaatgaacctaacatcagaggttactaaatcagaagc 5839738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 36531263 - 36531193
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgaca 409  Q
    ||||||| |||||||||||| ||||||| |||||||||||| || |||  ||| || ||||||||||||||    
T  36531263 tgcatttcattcataataatagtagagaaacaagatggaatcctaatatgaatatggaaattagcatgaca 36531193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 11503073 - 11503150
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| ||||| |||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  11503073 aaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 11503150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 31037689 - 31037762
Alignment:
Q  316 tttgtttacataagaaaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaa 389  Q
    |||||| ||| ||| ||| ||| ||||||| ||||| |||||| ||||||||||||||||||||| | ||||||    
T  31037689 tttgttgacagaagtaaagttactgcatttcattcaaaataatagtagagatacaagatggaattttaataaaa 31037762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 32578186 - 32578109
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| ||||| |||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  32578186 aaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 32578109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 25663640 - 25663563
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| ||||| |||||| | |||||||||||||||||| || |||  ||| || ||| |||||||||    
T  25663640 aaacttattgcatttcattcaaaataataggagagatacaagatggaatcctaatatgaatatggaaaatagcatgac 25663563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 10631232 - 10631276
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatg 375  Q
    |||||||||||||||||||||||||||  ||||||| ||| ||||    
T  10631232 aaacttagtgcattttattcataataagagtagagacacatgatg 10631276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 410
Target Start/End: Complemental strand, 58535 - 58456
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacat 410  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||  || |||  ||| || ||| |||||||||||    
T  58535 aaacttattgcatttcattcataataatagtagagatacaagatggaaccctaatatgaatatggaaactagcatgacat 58456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 5315 - 5364
Alignment:
Q  330 aaaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    |||||||| ||||||| |||||| ||||| ||||||||||||||||||||    
T  5315 aaaacttattgcatttcattcatgataatagtagagatacaagatggaat 5364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 6848 - 6771
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| ||||| |||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  6848 aaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 6771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 187261 - 187184
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| ||||| |||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  187261 aaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 187184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 7608605 - 7608564
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatggaatt 380  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  7608605 tgcatttcattcataataatagtagagatacaagatggaatt 7608564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 34701311 - 34701356
Alignment:
Q  443 attggattgttttctaatgaacttcatatcagagttcactaaatca 488  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||    
T  34701311 attggtttgtcttctaatgaacttcaaatcagagttcactaaatca 34701356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 502
Target Start/End: Complemental strand, 32957573 - 32957402
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgacatggagctaccctatctaaact 430  Q
    |||||||  |||||| ||||| |||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    ||| || ||| | || ||    
T  32957573 aaacttatcgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagccactctagcaaagct 32957474  T
Q  431 atgagcaatttcattggattgttttctaatgaacttcatatcagagttcactaaatcagaagcgagtagacg 502  Q
    |||||| | ||| |||| |||| | | ||||||| | | ||||||| | |||||||||||||| | ||||||    
T  32957473 atgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaatagacg 32957402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 7435628 - 7435697
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    |||||||  ||||||||||| |||||||||||||||||||| || |||  ||| || ||| |||||||||    
T  7435628 tgcatttcgttcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgac 7435697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 34183125 - 34183202
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| ||||||| |||||||||| | |||||||||||||||| ||| |  ||| |||| |||||| || ||||||    
T  34183125 aaacttattgcatttaattcataatagtagtagagatacaagatgaaatcccaatataaatatgaaaactaacatgac 34183202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 6192678 - 6192630
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatggaat 379  Q
    ||||||| ||||||| |||||| ||||| ||||| ||||||||||||||    
T  6192678 aaacttattgcatttcattcatgataatagtagaaatacaagatggaat 6192630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 12523717 - 12523681
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatg 375  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  12523717 tgcatttcattcataataatggtagagatacaagatg 12523681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 29025240 - 29025284
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatg 375  Q
    ||||||| ||||||| |||||||||||| |||| |||||||||||    
T  29025240 aaacttattgcatttcattcataataatagtagtgatacaagatg 29025284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 31797988 - 31798024
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatg 375  Q
    |||||||||||||||||||| | ||||||||||||||    
T  31797988 tgcattttattcataataatagcagagatacaagatg 31798024  T

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Target: scaffold0577 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 2211 - 2280
Alignment:
Q  339 tgcattttattcataataatcgtagagatacaagatggaattctgataaaaatgtgaaaattagcatgac 408  Q
    ||||||| |||||||||||| ||||||||||||||| |||| || |||  ||| || ||| |||||||||    
T  2211 tgcatttcattcataataatagtagagatacaagatagaatcctaatatgaatatggaaactagcatgac 2280  T

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Target: scaffold0201 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 20765 - 20721
Alignment:
Q  331 aaacttagtgcattttattcataataatcgtagagatacaagatg 375  Q
    ||||||| ||||||| ||| |||||||| ||||||||||||||||    
T  20765 aaacttattgcatttcatttataataatagtagagatacaagatg 20721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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