View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_53 (Length: 579)
Name: NF8981_low_53
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Complemental strand, 34423733 - 34423192
Alignment:
| Q |
18 |
aattgcagggtaccatgtttacactttaacaaataaactgctactactatacattagccacagaaggttctcatcgtacaacagaatagacctgcaatgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34423733 |
aattgcagggtaccatgtttacactttaacaaataaactgctactactatacattagccacagaaggttctcatcatacaacagaatagacctgcaatgg |
34423634 |
T |
|
| Q |
118 |
gttcaaccttccctagactctgccatataagctttgtagcactatttattaagcaattcatcattaacagtcgttgatatcatcattcaaaagcaaagca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423633 |
gttcaaccttccctagactctgccatataagctttgtagcactattcattaagcaattcatcattaacagtcgttgatatcatcattcaaaagcaaagca |
34423534 |
T |
|
| Q |
218 |
acgttctgagagctcatttgaatgcatgaatagtttttaatgcagaaatgagaactacaggttataggttcccatgtagctccaaaatttacatcactta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34423533 |
acgttctgagagctcatttgaatgcatgaatagtttttaatgcagaaatgagaactacaggttataggttcccatgtagctccaaaatttacaccactta |
34423434 |
T |
|
| Q |
318 |
aaattacatttcatattgtaggagggtgaggacgcaaatgatgaaaaggatcacatcagctttaaaataaagtattacaagagatctttttaacaaatta |
417 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34423433 |
aaattacatttcatattgtagga-ggtgaggacgcaaatgatgaaaaggatcacatcagctataaaataaagtattacaagagatctttttaacaaatta |
34423335 |
T |
|
| Q |
418 |
aaagtccgatcattttgctaaaataaactatgaaaactaagaatctacaagaccatgatattcatatcccaaaatcagagtctaaaagactactccctct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423334 |
aaagtccgatcattttgctaaaataaactatgaaaactaagaatctacaagaccgtgatattcatatcccaaaatcagagtctaaaagactactccctct |
34423235 |
T |
|
| Q |
518 |
agccttaattataagcaaaagtaggtcaaagaaagttgatgta |
560 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34423234 |
agccttaattataagcaaaagtaggtcaaaaaaagttgatgta |
34423192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 508 - 579
Target Start/End: Original strand, 34423126 - 34423197
Alignment:
| Q |
508 |
tactccctctagccttaattataagcaaaagtaggtcaaagaaagttgatgtaattttcgaccaaatacatc |
579 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423126 |
tactccatctggccttaattataagcaaaagtaggtcaaagaaagttgatgtaattttcgaccaaatacatc |
34423197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 508 - 558
Target Start/End: Complemental strand, 3167695 - 3167645
Alignment:
| Q |
508 |
tactccctctagccttaattataagcaaaagtaggtcaaagaaagttgatg |
558 |
Q |
| |
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|||||||| | |||| ||||||||||||||||||||||||||||||||||| |
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| T |
3167695 |
tactccctgtggcctaaattataagcaaaagtaggtcaaagaaagttgatg |
3167645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 508 - 560
Target Start/End: Original strand, 11558332 - 11558384
Alignment:
| Q |
508 |
tactccctctagccttaattataagcaaaagtaggtcaaagaaagttgatgta |
560 |
Q |
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||||||||| || ||| ||| |||||||||||||||||||||||||||||||| |
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| T |
11558332 |
tactccctccagactttattgtaagcaaaagtaggtcaaagaaagttgatgta |
11558384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 509 - 560
Target Start/End: Complemental strand, 11558493 - 11558442
Alignment:
| Q |
509 |
actccctctagccttaattataagcaaaagtaggtcaaagaaagttgatgta |
560 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||| | |||||| |
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| T |
11558493 |
actccctctggccttaattataagcaaaactaggtcaaagaaaatcgatgta |
11558442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 23314668 - 23314714
Alignment:
| Q |
511 |
tccctctagccttaattataagcaaaagtaggtcaaagaaagttgat |
557 |
Q |
| |
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||||||| || || ||||||||||||||| ||||||||||||||||| |
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| T |
23314668 |
tccctctggcattgattataagcaaaagttggtcaaagaaagttgat |
23314714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 552
Target Start/End: Complemental strand, 23314778 - 23314749
Alignment:
| Q |
523 |
taattataagcaaaagtaggtcaaagaaag |
552 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23314778 |
taattataagcaaaagtaggtcaaagaaag |
23314749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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