View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_55 (Length: 578)
Name: NF8981_low_55
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_55 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 288 - 560
Target Start/End: Original strand, 36942436 - 36942708
Alignment:
| Q |
288 |
ccttctaaagttgagctaaaatcccatgaagagatagtgtgtacagcagtgcgatttccagtggcagctgagaagccaatagtaacaaattctggcagat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942436 |
ccttctaaagttgagctaaaatcccatgaagagatactgtgtacagcagtgcgatttccagtggcagctgagaagccaatagtaacaaattctggcagat |
36942535 |
T |
|
| Q |
388 |
aaagtctaagatcaactatggaagataaatgttgattcacaatgctagaagttacgttattaaaaccagtgaataaaacacttagatttaatgaactagc |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942536 |
aaagtctaagatcaactatggaagataaatgttgattcacaatgctagaagttacgttattaaaaccagtgaataaaacacttagatttaatgaactagc |
36942635 |
T |
|
| Q |
488 |
attgtaattgatccaagcctcattgagtctgccttgtttgatatcagccaaccatgtaacattagcaacagac |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942636 |
attgtaattgatccaagcctcattgagtctaccttgtttgatatcagccaaccatgtaacattagcaacagac |
36942708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 36942153 - 36942404
Alignment:
| Q |
5 |
atgctaatcattgaaattattggctgtattggctaattctgcatatgtatacttcttgggtcctgtccctcttccgaaatcttcacccatgtactcttca |
104 |
Q |
| |
|
||||| ||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36942153 |
atgctcatctttgaaattattagctgcatttgctaattctgcatatgtatacttcttgggtcctgtccctcttccgaaatcttcacccatgtactcttga |
36942252 |
T |
|
| Q |
105 |
aattcaccatcttcatgttctcttcttttcctccacaagaaaacccaaataaaaccgaatacaccaatgagaacaaatccaccggttcccaatcccactg |
204 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942253 |
aattcaccatcttcctgttctcttcttttcctccacaagaaaacccaaataaaaccaaatacaccaatgagaacaaatccaccggttcccaatcccactg |
36942352 |
T |
|
| Q |
205 |
ctagtcctgtcttggcctttttgtttgaagatggagactttgtaactgggtc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942353 |
ctagtcctgtcttggcctttttgtttgaagatggagactttgtaactgggtc |
36942404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 36938934 - 36938852
Alignment:
| Q |
36 |
gctaattctgcatatgtatacttcttgggtcctgtccctcttccgaaatcttcacccatgtactcttcaaattcaccatcttc |
118 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| ||| ||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
36938934 |
gctaattctgcatatgtatacttcctaggtcctgccccccttccaaaatcctctcccatgtactcttcaaattcaccatcttc |
36938852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 36938799 - 36938750
Alignment:
| Q |
162 |
aatacaccaatgagaacaaatccaccggttcccaatcccactgctagtcc |
211 |
Q |
| |
|
||||||||||| | |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
36938799 |
aatacaccaatcaaaacaaatccaccaattcctaatcccactgctagtcc |
36938750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University