View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_56 (Length: 575)
Name: NF8981_low_56
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 34316322 - 34315760
Alignment:
| Q |
1 |
aacattatcaagtgttgttagaaatatcatggaattttagtcaataaaatcaaaatactatgtatatatattgtaacaccccctcgtccatcttttttcg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316322 |
aacattatcaagtgttgttagaaatatcatggaattttagtcaataaaatcaaaatactatgtatatatattgtaacaccccctcgtccatcttttttcg |
34316223 |
T |
|
| Q |
101 |
gaccaagaatgttacttgtaggtactgactggtacggaaaaaagagctgcgagaggaattttacacataatttgaaggnnnnnnn-gttatgaataaaag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
34316222 |
gaccaagaatgttacttgtaggtactgactggtccggaaaaaagagctgcgagaggaatgttacacataatttgaaggaaaaaaaagttatgaataaaag |
34316123 |
T |
|
| Q |
200 |
aacgtactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatcgctgatcactatgtcat |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316122 |
aacgtactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatcgctgatcactatgtcat |
34316023 |
T |
|
| Q |
300 |
atgtacctttactttcgcggagcttcttaagagcctctattgctaagcaacatgtggtcactgagagcacaagatagataagtgttagaagatgaagatg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316022 |
atgtacctttactttcgcggagcttcttaagagcctctattgctaagcaacatgtggtcactgagagcacaagatagataagtgttagaagatgaagatg |
34315923 |
T |
|
| Q |
400 |
aatataagactattaagactaatatctcgaaccaagtaagacacatgaggcacaaaactcttcctcaataccttttaatgttgttatgaatgtcaattta |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34315922 |
aatataagactattaagactaatatctcgaaccaagtaagacacatgaggcacaaaactcttcctcaataccttttaatgttgttatgagtgtcaattta |
34315823 |
T |
|
| Q |
500 |
aacaccttggttaattaagttaaaagagaccagtactatcatctcatcctagctagaattatt |
562 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34315822 |
aacaccttggttaattaagttaaaagagaccagtactatcatctcatcctagctagaattatt |
34315760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 205 - 363
Target Start/End: Original strand, 38953323 - 38953481
Alignment:
| Q |
205 |
actaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatcgctgatcactatgtcatatgta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||| | |
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| T |
38953323 |
actaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcactatatcgtatcca |
38953422 |
T |
|
| Q |
305 |
cctttactttcgcggagcttcttaagagcctctattgctaagcaacatgtggtcactga |
363 |
Q |
| |
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|||| ||||| |||||| | ||||| | | ||||||||||||||||||||||||| |
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|
| T |
38953423 |
tctttcctttcacggagcaagcttagagcatgtcttgctaagcaacatgtggtcactga |
38953481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 47281042 - 47281113
Alignment:
| Q |
204 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgt |
275 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||| |||| || || |||| ||||||||||||||||||| |
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| T |
47281042 |
tacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgt |
47281113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 49061168 - 49061252
Alignment:
| Q |
204 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatcgctgat |
288 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||||| ||| ||||||| || || || ||||||||||| ||||||| |||||| ||||| |
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|
| T |
49061168 |
tacttatgacgggaaggtccatttcaagtcccacaagttcaagcagcttaaatccatccatgtccggcatgtgtacatcactgat |
49061252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 54895037 - 54895115
Alignment:
| Q |
204 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatc |
282 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||| || ||||| || |||||||||||||| || |||||||||||||| |
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| T |
54895037 |
tactaatgaaaggcaggtccatctcaagtccaacttgctcaaggagcttgaaaccatccatttctggcatgtttacatc |
54895115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 2888629 - 2888535
Alignment:
| Q |
204 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatcgctgatcactatgtca |
298 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||||| | |||||||| || || ||||||||||| ||||| | |||| |||||| |||| |||| |
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|
| T |
2888629 |
tacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattactaggtca |
2888535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 2904732 - 2904638
Alignment:
| Q |
204 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatcgctgatcactatgtca |
298 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||| | |||||||| || || ||||||||||| ||||| | |||| |||||| |||| |||| |
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|
| T |
2904732 |
tactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattactaggtca |
2904638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 2893224 - 2893130
Alignment:
| Q |
204 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatcgctgatcactatgtca |
298 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||| | |||||||| || || || |||||||| ||||| | |||| |||||| |||| |||| |
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| T |
2893224 |
tactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccgtccatgtctggcatatgaacattgctgattactaggtca |
2893130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 13430650 - 13430719
Alignment:
| Q |
204 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcat |
273 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||| |||||| | ||||||||| |||||||| || ||||| |
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| T |
13430650 |
tactaataacaggaagatccatctccaatccaatatgttccaaaagtttgaatccatccatatccggcat |
13430719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 48870455 - 48870519
Alignment:
| Q |
209 |
atgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcat |
273 |
Q |
| |
|
|||||||| || |||||||||||||||||| | |||||||| || || ||||||||||| ||||| |
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|
| T |
48870455 |
atgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcat |
48870519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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