View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_59 (Length: 549)
Name: NF8981_low_59
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_59 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 32528515 - 32529028
Alignment:
| Q |
18 |
gaaaatgcatgctctaattcacgtcatcatttcattcatgcatactcatttttccaataaataacagcttagttgaattacttgaagtaattcattccac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32528515 |
gaaaatgcatgctctaattcacgtcatcatttcatttatgcatactcatttttccaataaataacagcttagttgaattacttgaagtaattcattccac |
32528614 |
T |
|
| Q |
118 |
gattctgtttggtgcacccactgtagtacgctctaacgagcaagaacaatgaatagcattgttgaattaagttttcaatttacatgacttatatttaaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32528615 |
gattctgtttggtgcacccactgtagtacgctctaacgagcaagaacaatgaatagcattgttgaattaagttttcaatttacatgacttatatttaaac |
32528714 |
T |
|
| Q |
218 |
tgcatatatactgaaattcactcatcatcaaaatcacgcaagctcgacattctcctatatactcattttataaatgctgcctttatgcaacaacaaaaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32528715 |
tgcatatatactgaaattcactcatcatcaaaatcacgcaagctcgacattctcctatatactcattttataaatgctgcctttatgcaacaacaaaaca |
32528814 |
T |
|
| Q |
318 |
acatttaaataaaacattattggattcttccatgcggatcatgttgtgcatgtttttggtcgagctagcttgcgattaactcgctgc----taattcatt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32528815 |
acatttaaataaaacattattggattcttccatgcggatcatgttgtgcatgtttttggtcgagctagcttgcgattaactcgctgctaattaattcatt |
32528914 |
T |
|
| Q |
414 |
cactttgtccattgaaaatacatagtaataacgtaacttaattagggtgcaagatctgtatgctgcttgacatttaaacattatttattcacacaatatt |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32528915 |
cactttgtccattgaaaatacatagtaataacgtaac----ttagggtgcaagatctgtatgctgcttgacatttaaacattatttattcacacaatatt |
32529010 |
T |
|
| Q |
514 |
tatgtctatctatatgat |
531 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32529011 |
tatgtctatctatatgat |
32529028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University