View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_60 (Length: 548)
Name: NF8981_low_60
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_60 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Original strand, 25788219 - 25788764
Alignment:
| Q |
1 |
catagacgataaccgcgtttcttaaaattttactttacaacataaagtgaatccaaactttagtttattggttttacacttgtggtcgtttgtttgcctt |
100 |
Q |
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| T |
25788219 |
catagacgataacagcgtttcttaaaattttactttacaacataaagtgaatccaaacttttgtttattggttttacacttgtggtcgtttgattacctt |
25788318 |
T |
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| Q |
101 |
aaaaatataaaggatttgacaatatactgtaattgttcatttagacttatcattcaataactttattggtacacttccctctttcagaatgagtaaagaa |
200 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25788319 |
aaa--tataaaggatttgacagtatactgtaattgttcatttagacttatcattcaataactttattgctacacttccctctttcagaatgagtaaagaa |
25788416 |
T |
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| Q |
201 |
cttcgatatttatcgctgttgcacaataatttgtg-ggatgcggcttgaccaatggcacaatgcggcttgacatgattcagaggctgcagagtttaaata |
299 |
Q |
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| T |
25788417 |
cttcgatatttatcgctgttgcacaataatttgacaggatgcggcttgaacaatggcacaatgcggcttgacatgattcagaggctgcagagtttaaata |
25788516 |
T |
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| Q |
300 |
cattaggcctctcatacaacaatttgtcagttgatataactttcaatgaaaatcatgatggcctttcatcctttccaaagatgaaatatctgttgttagc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788517 |
cattaggcctctcatacaacaatttgtcagttgatataactttcaatgaaaatcatgatggcctttcatcctttccaaagatgaaatatctgttgttagc |
25788616 |
T |
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| Q |
400 |
ttcttgtaagttgagggaatttccaaagttcatgagaaatcaaccccatctaaaatggcctagacttatccaacaactacattcatggagcaataccaat |
499 |
Q |
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|||||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788617 |
ttcttgtaagttgatggagtttccaaagttcttgagaaatcaaccccatct-aaatggcctagacttatccaacaactacattcatggagcaataccaaa |
25788715 |
T |
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| Q |
500 |
ctggatattgagattcgactatctggtttatctgaatctttccaataat |
548 |
Q |
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| T |
25788716 |
ctggatattgagattcaactatctggtttatctgaatctttccaataat |
25788764 |
T |
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