View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_63 (Length: 547)
Name: NF8981_low_63
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 12 - 531
Target Start/End: Complemental strand, 37673284 - 37672765
Alignment:
| Q |
12 |
atggacatcaatacaaaaacatgttctggaaaacatgatacaagtatgactctccgctcaaaaaattattatacttttgtggagagtaggaaagacatga |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37673284 |
atggtcatcaatacaaaaacatgttctggaaaacatgatacaagtatgactctccactcaaaaaattattatacttttgtggagagtaggaaagacatga |
37673185 |
T |
|
| Q |
112 |
atgagaaaaaaccagtcacttgtattgctaacaacattgctaaatctgaggggatagtacaacctccattcttgagcattggttctaatgtctctgtcaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
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| T |
37673184 |
atgagaaaaaaccagtcacttgtattgctaacaacattgctaaatctgaggggatagtgcaacctccattctctagcgttggttctaatgtctctgtcaa |
37673085 |
T |
|
| Q |
212 |
gtccgttttaaggaagatgactgaagacccaaaggacgcagagcgtttcactcctctatctgcaaaaactttattagcaactgatgttacctgtgctatg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37673084 |
gtccgttttaaggaagatgactgaagacccaaaggacgcagagcgtttcactcctctatctgcaaaaactttattagcaactgatgttacctgtgctatg |
37672985 |
T |
|
| Q |
312 |
ttgcaagcttccatgtgtaggttacgacacacactcttatcttctggtaacaacctcgttcctgttggtttgaataggtccactggggttacattttcta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37672984 |
ttgcaagcttccatgtgtaggttacgacacacactcttatcttctggtaacaacctcgttcctgttggtttgaataggtccactggggttacattttcta |
37672885 |
T |
|
| Q |
412 |
atcagcttccaactgatccaagtacgaccacagacaacatatctggcaagtacgaggtgaaaaagaaagagaatataccggtcaggattgcaggtgattt |
511 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37672884 |
atcagcttccaactgatccaagtaccaccacagacaacatatctggcaagtacgaggtgaaaaagaaagagaatataccggtcaggattgcaggtgattt |
37672785 |
T |
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| Q |
512 |
tgatggaggaatgcttgatg |
531 |
Q |
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|||||||||||||||||||| |
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| T |
37672784 |
tgatggaggaatgcttgatg |
37672765 |
T |
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