View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_68 (Length: 528)
Name: NF8981_low_68
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_68 |
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| [»] scaffold0209 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0209 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 339 - 509
Target Start/End: Complemental strand, 15839 - 15669
Alignment:
| Q |
339 |
ttgtagcttcatcatttaaacaatacaaaaacctcatgagcaaacaatccaaacaacattcaacaaaaatcccctttctatttcaactaatttcctgatt |
438 |
Q |
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|||||||||||||||| ||||||||||||||||| | | |||||||||||||||||| ||||||||| ||||||||||||||| |||| |||||||| |
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| T |
15839 |
ttgtagcttcatcattcaaacaatacaaaaaccttaaagcccaacaatccaaacaacattaaacaaaaatgccctttctatttcaagtaatgtcctgatt |
15740 |
T |
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| Q |
439 |
ctttctttaccaataacaaagattaaagtgactaaactttaccttaaaaaagtgaagtatgagagctgaag |
509 |
Q |
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|||| | ||||||||| ||||||| || | | |||| |||||||| | ||| ||||||||||||||||||| |
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| T |
15739 |
ctttttgtaccaataataaagattcaaattaataaattttaccttgataaactgaagtatgagagctgaag |
15669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 339 - 509
Target Start/End: Original strand, 20188 - 20358
Alignment:
| Q |
339 |
ttgtagcttcatcatttaaacaatacaaaaacctcatgagcaaacaatccaaacaacattcaacaaaaatcccctttctatttcaactaatttcctgatt |
438 |
Q |
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| T |
20188 |
ttgtagcttcatcattcaaacaatacaaaaaccttaaagcccaacaatccaaacaacattaaacaaaaatgccctttctatttcaagtaatgtcctgatt |
20287 |
T |
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| Q |
439 |
ctttctttaccaataacaaagattaaagtgactaaactttaccttaaaaaagtgaagtatgagagctgaag |
509 |
Q |
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| T |
20288 |
ctttttgtaccaataataaagattcaaattaataaattttaccttgataaactgaagtatgagagctgaag |
20358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 339 - 509
Target Start/End: Original strand, 22069584 - 22069755
Alignment:
| Q |
339 |
ttgtagcttcatcatttaaacaatacaaaaacctcatgagca-aacaatccaaacaacattcaacaaaaatcccctttctatttcaactaatttcctgat |
437 |
Q |
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|||||||||||||||| ||||||||||||||||| || ||| |||||||||||||||||| ||||||| | ||||||||||||||| |||| ||||||| |
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| T |
22069584 |
ttgtagcttcatcattcaaacaatacaaaaaccttataagcccaacaatccaaacaacattaaacaaaagtgccctttctatttcaagtaatgtcctgat |
22069683 |
T |
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| Q |
438 |
tctttctttaccaataacaaagattaaagtgactaaactttaccttaaaaaagtgaagtatgagagctgaag |
509 |
Q |
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||||| | ||||||||| ||||||| || | | |||| |||||||| | ||| ||||||| ||||||||||| |
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| T |
22069684 |
tctttatgtaccaataataaagattcaaattaataaattttaccttgataaactgaagtaggagagctgaag |
22069755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 19025619 - 19025671
Alignment:
| Q |
398 |
tcaacaaaaatcccctttctatttcaactaatttcctgattctttctttaccaa |
451 |
Q |
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| T |
19025619 |
tcaacaaaaatccactttctattt-aagtaatgtcctgattctttctataccaa |
19025671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 497
Target Start/End: Complemental strand, 15842640 - 15842519
Alignment:
| Q |
377 |
agcaaacaatccaaac-aacattcaacaaaaatcccctttctatttcaactaatttcctgattctttctttaccaataacaaagattaaagtgactaaac |
475 |
Q |
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|||||||||||||||| || |||||||||||||| |||||||||||| ||||||| |||| ||||| ||||||||||||||||| || ||| |||| |
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| T |
15842640 |
agcaaacaatccaaactaagattcaacaaaaatcttatttctatttcaagtaatttctcgattttttctataccaataacaaagattcaaatgaataaat |
15842541 |
T |
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| Q |
476 |
tttaccttaaaaaagtgaagta |
497 |
Q |
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|||||||| ||||||||||| |
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| T |
15842540 |
tttacctttgtaaagtgaagta |
15842519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 29746516 - 29746562
Alignment:
| Q |
363 |
acaaaaacctcatgagcaaacaatccaaacaacattcaacaaaaatc |
409 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29746516 |
acaaaaaccttgtgagcaaacaatccaaacaacattcaacaaaaatc |
29746562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 2002203 - 2002247
Alignment:
| Q |
398 |
tcaacaaaaatcccctttctatttcaactaatttcctgattcttt |
442 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
2002203 |
tcaacaaaaatcccctttctatttcaagtaatgtcctgattcttt |
2002247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 510
Target Start/End: Original strand, 2069232 - 2069376
Alignment:
| Q |
358 |
acaatacaaaaacctcatgagcaaacaatccaaacaacattcaacaaaaatcccctttctatttcaactaatttcctgattctttctttaccaataacaa |
457 |
Q |
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||||||||| || || ||||||||| |||||||||||||||||| ||||||| |||||||| || |||||||| |||||| |||||||||| |
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| T |
2069232 |
acaatacaagaatcttatgagcaaataatccaaacaacattcaa-------cccctttatatttcaagtagcttcctgatcctttctataccaataacct |
2069324 |
T |
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| Q |
458 |
agattaaagtgactaaactttaccttaaaaaagtgaagtatgagagctgaagt |
510 |
Q |
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| ||| || ||| |||| |||||||| | ||||||||||| |||| |||||| |
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| T |
2069325 |
a-attcaaatgaataaattttaccttgagaaagtgaagtagcagaggtgaagt |
2069376 |
T |
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