View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_7 (Length: 952)
Name: NF8981_low_7
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_7 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 854; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 854; E-Value: 0
Query Start/End: Original strand, 22 - 937
Target Start/End: Complemental strand, 595449 - 594534
Alignment:
| Q |
22 |
ctctgctcatgctatgtggaaattggttttatgtggctgattgtcatcaatgttactcgacattcctatcataaataccgagctagcttcactcatttac |
121 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595449 |
ctctgctcatgctatgtggacattggttttatgtggctgattgtcatcaatgttactcgacattcctatcataaataccgagctagcttcactcatttac |
595350 |
T |
|
| Q |
122 |
attgtcatctcaactatcccttaagctattcactcatttacataccgagctagcttcctatcatatctcttaatttatatgcaccagagagagggcgaca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595349 |
attgtcatctcaactatcccttaagctattcactcatttacataccgagctagcttcctatcatatctcttaatttatatgcaccagagagagggcgaca |
595250 |
T |
|
| Q |
222 |
gacaatccatccaagatttatacgttcatttgagtacttagtcgactacttatgaacccgtgataagttgtaaaagcaaaactgcaagggtacaaatctg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
595249 |
gacaatccatccaagatttatacgttcatttgagtacttagtcgactacttatgaacccgtgataagttgtaaaagcaaaactgcaatggtacaaatctg |
595150 |
T |
|
| Q |
322 |
caaattaatgatgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaaca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
595149 |
caaattaatgatgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaaca |
595050 |
T |
|
| Q |
422 |
ataagaaaaatattattcatttgcatcgacagtttaagattcttacggcaaagctttcttatgcggatccttaaagaacccacaaataaatggttgcgaa |
521 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595049 |
ataagaaaaatattattcatttgcattgacagtttaagattcttacggcaaagctttcttatgcggatccttaaagaacccacaaataaatggttgcgaa |
594950 |
T |
|
| Q |
522 |
aggttcatcatgaagaccttcacaagggaagaatcgtacctaaagattcagctaaactcataaaactataaaagtaattacagtctacatacacacgagc |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
594949 |
aggttcatcatgaagaccttcacaagggaagaatcgtacctaaagattcagctaaactcataaaactataaaagtaattacagtctacatacacacgagc |
594850 |
T |
|
| Q |
622 |
aatcctgattgaattgtgagtagcacctatnnnnnnnnnnnnnntgatcaacatcattataaaatgttactttccttcccggaaaagcaataatctaaaa |
721 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
594849 |
aatcctgattgaattgtgagtagcaccaataaaaaaaagaaaaatgatcaacatcattataaaatgttactttccttcccggaaaagcaataatctaaaa |
594750 |
T |
|
| Q |
722 |
attgaaacacaataattcagatctatgaccaatcccatttatttctctgccaattcgataaaatgtgcggacataataccctgcatcatagcagaacaac |
821 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
594749 |
attgaaacacaataattcagatctatgaccaatcccatttatttctctgccaattcgataaaatgtgcggacataataccctgcatcatagcagaacaac |
594650 |
T |
|
| Q |
822 |
ctgaaaactagacttcaagtaagctactagacttgtctcttctatggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcacat |
921 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
594649 |
ctgaaaactagacttcaagtaagctactagacttgtctcttctatggcagtggcaacatcaaacttggtgctttttctcattaacataaacttatcacat |
594550 |
T |
|
| Q |
922 |
tcctgcagtacgaatt |
937 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
594549 |
tcctgcagtacgaatt |
594534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 671 - 746
Target Start/End: Original strand, 26946561 - 26946636
Alignment:
| Q |
671 |
aacatcattataaaatgttactttccttcccggaaaagcaataatctaaaaattgaaacacaataattcagatcta |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
26946561 |
aacatcattataaaatgttactttccttcccggaaaagcaataatctaaaaaatgaaacacaataattcagatcta |
26946636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 6e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 332 - 550
Target Start/End: Original strand, 28168753 - 28168972
Alignment:
| Q |
332 |
atgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaa |
431 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||||||| ||||||||| |||||||| ||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
28168753 |
atgaactttggaaaatgttcttgcttcagtctcatttccaaaaacatagtccatatacctgaatcccagaatgcaaatccttaaagatcaataagaaaaa |
28168852 |
T |
|
| Q |
432 |
tattattcatttgca-tcgacagtttaagattcttacggcaaagctttcttatgcggatccttaaagaacccacaaataaatggttgcgaaaggttcatc |
530 |
Q |
| |
|
|| ||| |||| | | |||||||| ||||||||||||| |||||||| || |||||||| |||||| | || ||||||||| |||||||||||| |
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|
| T |
28168853 |
aataatttatttcaatttaacagtttaggattcttacggcagagctttctcctgtggatccttgaagaactcgcagataaatggtgcagaaaggttcatc |
28168952 |
T |
|
| Q |
531 |
atgaagaccttcacaaggga |
550 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28168953 |
atgaagaccttcacaaggga |
28168972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 682 - 746
Target Start/End: Original strand, 28169915 - 28169979
Alignment:
| Q |
682 |
aaaatgttactttccttcccggaaaagcaataatctaaaaattgaaacacaataattcagatcta |
746 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||||| |
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|
| T |
28169915 |
aaaatgttactttccttcccggaaacacaataatctataaattaaaacacaacaattcagatcta |
28169979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 502 - 550
Target Start/End: Original strand, 27925051 - 27925099
Alignment:
| Q |
502 |
cacaaataaatggttgcgaaaggttcatcatgaagaccttcacaaggga |
550 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27925051 |
cacagataaatggtgcagaaaggttcatcatgaagaccttcacaaggga |
27925099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 671 - 735
Target Start/End: Complemental strand, 1755186 - 1755122
Alignment:
| Q |
671 |
aacatcattataaaatgttactttccttcccggaaaagcaataatctaaaaattgaaacacaata |
735 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
1755186 |
aacatcattataaaatgttactttccttcccggaatagcaataatctaaaaaatgaaacacaata |
1755122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 332 - 550
Target Start/End: Complemental strand, 22476977 - 22476755
Alignment:
| Q |
332 |
atgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaa |
431 |
Q |
| |
|
||||||||| |||||| | | ||||| | ||||||||| || |||||| |||||||| ||||||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
22476977 |
atgaactttcgaaaatgtccgtgcttcagtctcatttccaaatacatagtccatatacctgaatcccagaatgcaaacccttaaagatcaataagaaaaa |
22476878 |
T |
|
| Q |
432 |
tat---tattcatttgca-tcgacagtttaagattcttacggcaaagctttcttatgcggatccttaaagaacccacaaataaatggttgcgaaaggttc |
527 |
Q |
| |
|
|| |||| |||| | | ||| || | ||||||||||| | |||||||| || |||||||| |||||| |||| ||||| ||| ||||||||| |
|
|
| T |
22476877 |
cataaatatttatttaaatttgacggtgaaggattcttacggaagagctttctcctgtggatccttgaagaactcacagataaagggtgcagaaaggttc |
22476778 |
T |
|
| Q |
528 |
atcatgaagaccttcacaaggga |
550 |
Q |
| |
|
|||||||| |||| | ||||||| |
|
|
| T |
22476777 |
atcatgaaaacctgcgcaaggga |
22476755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 738
Target Start/End: Complemental strand, 22475861 - 22475812
Alignment:
| Q |
689 |
tactttccttcccggaaaagcaataatctaaaaattgaaacacaataatt |
738 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
22475861 |
tactttccttcccggaaacacaataatctaaaaatgaaaacacaagaatt |
22475812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 858 - 919
Target Start/End: Complemental strand, 45085115 - 45085054
Alignment:
| Q |
858 |
ctcttctatggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcac |
919 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
45085115 |
ctcttctatgacagcggcaacatcaaacttggtgctttttctcaatgacataaacttctcac |
45085054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 843 - 914
Target Start/End: Complemental strand, 39925946 - 39925875
Alignment:
| Q |
843 |
agctactagacttgtctcttctatggcattggcaacatcaaacttggtgctttttctcattaacataaactt |
914 |
Q |
| |
|
||||||||||||| ||||| ||||| | ||||| |||||||||||||| ||||||||| | |||||||||| |
|
|
| T |
39925946 |
agctactagacttccctcttttatggaagtggcatcatcaaacttggtgttttttctcaatgacataaactt |
39925875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 4589785 - 4589707
Alignment:
| Q |
75 |
tactcgacattcctatcataaataccgagctagcttcactcatttacatt-gtcatctcaactatcccttaagctattc |
152 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
4589785 |
tactcgacattaatactataaataccgagctagcttcagtcatttacattcatcatctcaattatttcttaagctattc |
4589707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 866 - 929
Target Start/End: Complemental strand, 37550835 - 37550772
Alignment:
| Q |
866 |
tggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcacattcctgcag |
929 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||| | |||||||||| |||| | ||||||| |
|
|
| T |
37550835 |
tggcagtggcatcatcaaacttagtgctttttctcaatgacataaacttctcacgtgcctgcag |
37550772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 866 - 929
Target Start/End: Complemental strand, 37653664 - 37653601
Alignment:
| Q |
866 |
tggcattggcaacatcaaacttggtgctttttctcattaacataaacttatcacattcctgcag |
929 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||| | |||||||||| |||| | ||||||| |
|
|
| T |
37653664 |
tggcagtggcatcatcaaacttagtgctttttctcaatgacataaacttctcacgtgcctgcag |
37653601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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