View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_71 (Length: 525)
Name: NF8981_low_71
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_71 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 51739177 - 51739688
Alignment:
| Q |
18 |
caatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtccttaggaccctaggtcaacctggacccgttgcacaaattctggt |
117 |
Q |
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| T |
51739177 |
caatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtccttaggaccctaggtcaacctggacccgttgcacaaattctggt |
51739276 |
T |
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| Q |
118 |
aattgattagttattgtttcatt---ctacattatttat-ttacattgaagttttcaattattaatgcattgattgcattgttgaattacaggcagggtt |
213 |
Q |
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| T |
51739277 |
aattgattagttattgtttcattaatctacattatttacattgaattgaagttttcaattattaatgcattgattgcattgttgaattacaggcagggtt |
51739376 |
T |
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| Q |
214 |
ggtattaggcccaatgtcacatattcgatgcataaaagaaacattctttcttgccaattccatgaattactacgaagttgtgagcttcttttgtcgaata |
313 |
Q |
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| T |
51739377 |
ggtattaggcccaatgtcacatattcgatgcataaaagaaacattctttcctgccaattccatgaattactacgaagttgtgagcttcttttgtcgaata |
51739476 |
T |
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| Q |
314 |
aatttcatgtttttatttggcttagagatgaatattcaatacgcattgcgtaatctacgtttagtgagcttggtagcatgtggtggtgtggtaatgggtg |
413 |
Q |
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| T |
51739477 |
aatttcatgtttttatttggcttagagatgaatattcaatacgcattgcgtaatctacgtttagtgagcttggtagcatgtggtggtgtggtaatgggtg |
51739576 |
T |
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| Q |
414 |
taatttttggtctatctgtctcattttatttatatcaagaattaggcatcgatggttcaaggttttatttctgtatgattattatgttagttgtatcata |
513 |
Q |
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| T |
51739577 |
taatttttggtctatctgtctcattttatttatatcaagaattaggcatcgatggttcaaggttttatttctgtatgattattatgttagttgtatcata |
51739676 |
T |
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| Q |
514 |
cacaagttcccc |
525 |
Q |
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| T |
51739677 |
cacaagttcccc |
51739688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 186 - 363
Target Start/End: Original strand, 10200041 - 10200216
Alignment:
| Q |
186 |
attgcattgttgaattacaggcagggttggtattaggcccaatgtcacatattcgatgcataaaagaaacattctttcttgccaattccatgaattacta |
285 |
Q |
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| T |
10200041 |
attgcattgttgaa--acaggctgggttgatattaggtccaatgtctcatattccatatataaaagagacattctttccagccagttccataaattacta |
10200138 |
T |
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| Q |
286 |
cgaagttgtgagcttcttttgtcgaataaatttcatgtttttatttggcttagagatgaatattcaatacgcattgcg |
363 |
Q |
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| T |
10200139 |
tcaagtagtgagcttcttttgtcgcataaatttcatgtttttatttggcttggaaatgaatattcactacacattgcg |
10200216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 10199609 - 10199709
Alignment:
| Q |
20 |
atgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtccttaggaccctaggtcaacctggacccgttgcacaaattctggtaa |
119 |
Q |
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| T |
10199609 |
atgggtatgcaagtgtcatgcattcttgttgtgtcacacttcttcaacgttgttcttaggactatgggccaacctggacccattgcacaaattctggtaa |
10199708 |
T |
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| Q |
120 |
t |
120 |
Q |
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| T |
10199709 |
t |
10199709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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