View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_72 (Length: 521)

Name: NF8981_low_72
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_72
NF8981_low_72
[»] chr3 (7 HSPs)
chr3 (1-504)||(19990572-19991097)
chr3 (138-234)||(20032723-20032821)
chr3 (431-492)||(20006949-20007010)
chr3 (431-492)||(20014878-20014939)
chr3 (145-209)||(20006692-20006755)
chr3 (431-485)||(17115431-17115485)
chr3 (142-184)||(19952882-19952924)
[»] chr5 (3 HSPs)
chr5 (141-199)||(9816697-9816755)
chr5 (428-486)||(26353604-26353662)
chr5 (323-424)||(26353519-26353621)
[»] chr1 (1 HSPs)
chr1 (428-492)||(1718510-1718574)
[»] scaffold0455 (1 HSPs)
scaffold0455 (142-186)||(12093-12137)
[»] chr6 (1 HSPs)
chr6 (142-186)||(28134057-28134101)


Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 19991097 - 19990572
Alignment:
Q  1 ttttttctttcctgcacttcattatttattctttatcacattgaccaagtgttatcaccatacttgctctgtcgatat----------------ataaat 84  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                ||||||    
T  19991097 ttttttctttactgcacttcattatttattctttatcacattgaccaagtgttatcaccatacttgctctatcgatatgtatatatatatatatataaat 19990998  T
Q  85 gtgtttgtgcgtaaaagcatagcaacatatatatat------gtcagtctgtcaagccgatcttactaaagataaataacacaagcataggagataataa 178  Q
    |||| |||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19990997 gtgtgtgtgcgtaaaagcatagcaacatatatatatatatatgtcagtctgtcaagccgatcttactaaagataaataacacaagcataggagataataa 19990898  T
Q  179 aaacattatatcataagtcatctaaattagtcatacttactctttcaattgttatcgacatgagggtatgaaaagactcactatcacaagtttcataacg 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  19990897 aaacattatatcataagtcatctaaattagtcatacttactctttcaattgttatcaacatgagggtatgaaaagactcactatcacaagtttcataaag 19990798  T
Q  279 agagttttgaaaccaaatagtgttttaaaatatgatgatgataattgttgattccttagaacactagtgaggtgctgcttgacacttcttccctcttctc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19990797 agagttttgaaaccaaatagtgttttaaaatatgatgatgataattgttgattccttagaacactagtgaggagctgcttgacacttcttccctcttctc 19990698  T
Q  379 ccttgaatttattaactgtaagacctcttcctgttgtctttccagatgctcctgttctcttgccagacgtgtgagttcctcttgattcttcatgtatttc 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19990697 ccttgaatttattaactgtaagacctcttcctgttgtctttccagatgctcctgttctcttgccagacgtgtgagttcctcttgattcttcaagtatttc 19990598  T
Q  479 tcttttaagaaaactaatacatcatc 504  Q
    ||||||||||||||||||||||||||    
T  19990597 tcttttaagaaaactaatacatcatc 19990572  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 20032723 - 20032821
Alignment:
Q  138 atcttactaaagataaataacacaagcataggagataataaaaac--attatatcataagtcatctaaattagtcatacttactctttcaattgttatc 234  Q
    ||||||||||||||||||||||||| ||||| | |||||||||||  ||||||| |||| |||||||||  |||  |||||  ||||||| ||||||||    
T  20032723 atcttactaaagataaataacacaatcatagaatataataaaaacatattatatgataactcatctaaaccagtgttactttttctttcacttgttatc 20032821  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 20006949 - 20007010
Alignment:
Q  431 tgttctcttgccagacgtgtgagttcctcttgattcttcatgtatttctcttttaagaaaac 492  Q
    |||| |||||||||| | |||||||||||||||||||||| ||||| ||||||||| |||||    
T  20006949 tgttgtcttgccagatgcgtgagttcctcttgattcttcaagtattgctcttttaacaaaac 20007010  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 20014878 - 20014939
Alignment:
Q  431 tgttctcttgccagacgtgtgagttcctcttgattcttcatgtatttctcttttaagaaaac 492  Q
    |||| |||||||||| |  ||||||||||||||||||||| ||||| |||||||||||||||    
T  20014878 tgttgtcttgccagaagcctgagttcctcttgattcttcaagtattgctcttttaagaaaac 20014939  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 20006692 - 20006755
Alignment:
Q  145 taaagataaataacacaagcataggagataataaaaacattatatcataagtcatctaaattagt 209  Q
    |||||||| ||||||||||||||| |||||||||||||| |||||||||| | ||||||| ||||    
T  20006692 taaagatagataacacaagcatagcagataataaaaaca-tatatcataacttatctaaactagt 20006755  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 17115485 - 17115431
Alignment:
Q  431 tgttctcttgccagacgtgtgagttcctcttgattcttcatgtatttctctttta 485  Q
    |||| ||||||||||||  ||||||| ||||||||||||| ||||| ||||||||    
T  17115485 tgttgtcttgccagacgcctgagttcgtcttgattcttcaagtattgctctttta 17115431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 19952924 - 19952882
Alignment:
Q  142 tactaaagataaataacacaagcataggagataataaaaacat 184  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||    
T  19952924 tactatagataaataacacaagcatagcagaaaataaaaacat 19952882  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 9816755 - 9816697
Alignment:
Q  141 ttactaaagataaataacacaagcataggagataataaaaacattatatcataagtcat 199  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||||||||| ||||    
T  9816755 ttactaaagataaataaggcaagcatagaagataataaaaacattatatcataactcat 9816697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 486
Target Start/End: Original strand, 26353604 - 26353662
Alignment:
Q  428 tcctgttctcttgccagacgtgtgagttcctcttgattcttcatgtatttctcttttaa 486  Q
    ||||||| ||||||||||||  ||||||||||||||| ||||| ||||| |||||||||    
T  26353604 tcctgttgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaa 26353662  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 424
Target Start/End: Original strand, 26353519 - 26353621
Alignment:
Q  323 ttgttgattccttagaacactagtgaggtgctgcttga-cacttcttccctcttctcccttgaatttattaactgtaagacctcttcctgttgtctttcc 421  Q
    |||||||||| | ||||||||||||||| | ||| | | | |||| |||||||||||| | |||| ||||||  |||| | |||||||||||||||| ||    
T  26353519 ttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaatcgtaacatctcttcctgttgtcttgcc 26353618  T
Q  422 aga 424  Q
    |||    
T  26353619 aga 26353621  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 492
Target Start/End: Complemental strand, 1718574 - 1718510
Alignment:
Q  428 tcctgttctcttgccagacgtgtgagttcctcttgattcttcatgtatttctcttttaagaaaac 492  Q
    ||||||| |||||||||||||| ||| |||||||||||||||||| ||| ||||||||| |||||    
T  1718574 tcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattcctcttttaacaaaac 1718510  T

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Target: scaffold0455 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 12137 - 12093
Alignment:
Q  142 tactaaagataaataacacaagcataggagataataaaaacatta 186  Q
    |||||||||||||||| | |||||||| |||||||||||||||||    
T  12137 tactaaagataaataagaaaagcatagcagataataaaaacatta 12093  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 28134101 - 28134057
Alignment:
Q  142 tactaaagataaataacacaagcataggagataataaaaacatta 186  Q
    |||||||||||||||| | |||||||| |||||||||||||||||    
T  28134101 tactaaagataaataagaaaagcatagcagataataaaaacatta 28134057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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