View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_76 (Length: 519)
Name: NF8981_low_76
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 20625324 - 20624991
Alignment:
| Q |
19 |
agccatagtttcttgtatgggcagcaccaatccaatccatggtcgtgtcctacaaatactgcctgccattatcaaaaggaaaagaacttcaacaggattc |
118 |
Q |
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| T |
20625324 |
agccatagtttcttgtatgggcagcaccaatccaatccatggtcgtgtcctacaaatactgcctgccattatcaaaaggaaaagaacttcaacaggattc |
20625225 |
T |
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| Q |
119 |
caatattcaatatcatattttaagaaataccatcacaaaaacaaaacatttatctagtttctctaaagtatacaatccacaataaagtacaccaaaattc |
218 |
Q |
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| T |
20625224 |
caatattcaatatcatattttaagaaataccatcacaaaaacaaaacatttatctagcttctctaaagtatacaatccacaaaaaagtacaccaaaattc |
20625125 |
T |
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| Q |
219 |
tgctgttccatctacaaacaagtgagagttgagagtttcgcctcctacttagaatatgcaatacgcttgtaatgggcacctaggcattcaagtaaattga |
318 |
Q |
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| T |
20625124 |
tgctgttccatctacaaacaagtgagagttaagagtttcgcctcctacttagaatatgcaatacgcttgtaatgggcacctaggcattcaagtaaactga |
20625025 |
T |
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| Q |
319 |
gaaacctatc---ttctcagtttctcatcatgtc |
349 |
Q |
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| T |
20625024 |
gaaacctatcctgttctcagtttctcatcatgtc |
20624991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 408 - 505
Target Start/End: Complemental strand, 20624932 - 20624835
Alignment:
| Q |
408 |
caaactttatggaatattttagaaattcattgtacaaatatagtaggttgctttgaccttaccttgactgaggttcttttcacaagaagatccatgat |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20624932 |
caaactttatggaatattttagaaattcattgtacaaatatagtaggttgctttgaccttaccttgactgaggttcttttcacaagaagatccatgat |
20624835 |
T |
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