View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_79 (Length: 514)

Name: NF8981_low_79
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_79
NF8981_low_79
[»] chr2 (13 HSPs)
chr2 (96-496)||(35681636-35682036)
chr2 (319-496)||(31635525-31635698)
chr2 (101-327)||(31635882-31636112)
chr2 (112-234)||(22011076-22011198)
chr2 (101-183)||(27952637-27952719)
chr2 (124-212)||(280297-280385)
chr2 (96-166)||(2165636-2165706)
chr2 (105-222)||(33053125-33053241)
chr2 (101-222)||(36648579-36648700)
chr2 (98-222)||(32162225-32162347)
chr2 (140-233)||(18945646-18945739)
chr2 (100-174)||(23457389-23457462)
chr2 (101-177)||(36614845-36614921)
[»] chr7 (8 HSPs)
chr7 (101-496)||(4302838-4303234)
chr7 (105-217)||(11001090-11001202)
chr7 (102-222)||(1217473-1217591)
chr7 (122-213)||(1369529-1369620)
chr7 (105-220)||(8915437-8915551)
chr7 (102-178)||(1786424-1786500)
chr7 (101-222)||(13882995-13883117)
chr7 (96-218)||(11228430-11228551)
[»] chr8 (9 HSPs)
chr8 (221-496)||(37192736-37193008)
chr8 (96-222)||(23573240-23573365)
chr8 (96-166)||(22922157-22922227)
chr8 (101-174)||(26377776-26377849)
chr8 (101-176)||(22512360-22512435)
chr8 (98-240)||(2688855-2688999)
chr8 (101-165)||(2188719-2188783)
chr8 (124-220)||(24577813-24577909)
chr8 (109-152)||(37193064-37193107)
[»] chr5 (5 HSPs)
chr5 (96-234)||(21845197-21845335)
chr5 (105-222)||(18252124-18252241)
chr5 (124-166)||(19677630-19677672)
chr5 (96-130)||(21849278-21849312)
chr5 (96-130)||(21857192-21857226)
[»] chr1 (8 HSPs)
chr1 (97-217)||(10926905-10927026)
chr1 (96-219)||(10927811-10927934)
chr1 (101-217)||(13441901-13442015)
chr1 (96-222)||(23988929-23989055)
chr1 (111-183)||(8966022-8966094)
chr1 (101-223)||(31915240-31915365)
chr1 (100-214)||(40805571-40805685)
chr1 (113-176)||(31522584-31522647)
[»] chr6 (15 HSPs)
chr6 (96-222)||(18203141-18203265)
chr6 (98-222)||(12881729-12881852)
chr6 (101-218)||(22888963-22889080)
chr6 (105-221)||(34374051-34374167)
chr6 (96-166)||(30049629-30049699)
chr6 (96-166)||(30051916-30051986)
chr6 (101-218)||(22873520-22873637)
chr6 (101-218)||(22910506-22910623)
chr6 (99-166)||(3541959-3542026)
chr6 (96-218)||(12778664-12778784)
chr6 (101-146)||(11194398-11194443)
chr6 (122-178)||(8047661-8047717)
chr6 (96-132)||(18726879-18726915)
chr6 (112-176)||(32361109-32361173)
chr6 (127-165)||(18720031-18720069)
[»] chr4 (7 HSPs)
chr4 (96-222)||(22716318-22716444)
chr4 (96-222)||(22988773-22988899)
chr4 (98-222)||(10494628-10494752)
chr4 (124-218)||(7634998-7635092)
chr4 (96-166)||(13085398-13085471)
chr4 (99-157)||(6659640-6659697)
chr4 (116-178)||(9260313-9260375)
[»] chr3 (6 HSPs)
chr3 (101-222)||(365863-365983)
chr3 (101-171)||(3064051-3064121)
chr3 (113-222)||(8536655-8536764)
chr3 (101-177)||(2472969-2473045)
chr3 (101-137)||(43304270-43304306)
chr3 (119-164)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (96-166)||(45923-45993)
[»] scaffold0054 (3 HSPs)
scaffold0054 (101-218)||(10359-10476)
scaffold0054 (113-222)||(49018-49127)
scaffold0054 (118-157)||(37484-37523)
[»] scaffold0024 (2 HSPs)
scaffold0024 (105-218)||(145442-145555)
scaffold0024 (114-218)||(144177-144284)


Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 96 - 496
Target Start/End: Complemental strand, 35682036 - 35681636
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  35682036 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgtt 35681937  T
Q  196 gactccttcaatgaacaagagaccacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaata 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35681936 gactccttcaatgaacaagagaccacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcaaggtaccaacaata 35681837  T
Q  296 gcagactcacttgataattctgtataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaa 395  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681836 gcagactcacttgataattctgtataagttagagtactgttaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaa 35681737  T
Q  396 acgaatccctttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtac 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681736 acgaatccctttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtac 35681637  T
Q  496 c 496  Q
    |    
T  35681636 c 35681636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 319 - 496
Target Start/End: Complemental strand, 31635698 - 31635525
Alignment:
Q  319 ataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccctttttatttaagag 418  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||| |||||||| ||||    
T  31635698 ataagttagagcaccgttaagtgatgcctgatcattttgtacttgaagtataagaataaatgaaaccaacaca-tagacgaatccccttttatttgagag 31635600  T
Q  419 aataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacc 496  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  31635599 aataaccaatatcctttttcatgaaatccaagtaaaggtttaataacat---gcagaacaccaaatggtgagagtacc 31635525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 101 - 327
Target Start/End: Complemental strand, 31636112 - 31635882
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 200  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||  |||||||||| ||  ||||||| | || | ||||||||||||||    
T  31636112 aaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactc 31636013  T
Q  201 cttcaatgaacaagag----accacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatag 296  Q
    || |||||||||||||     ||||| |||||||||||||||||   |||  |||| |||||||||||| ||||||||||| |||  |||||||||||||    
T  31636012 ctccaatgaacaagagcacacccacccggatcccattggttgaactctgaaggtccgtttttatggacagagcagccactgtgcaatgtaccaacaatag 31635913  T
Q  297 cagactcacttgataattctgtataagttag 327  Q
    |||||||||||||||||||| ||||||||||    
T  31635912 cagactcacttgataattctatataagttag 31635882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 22011198 - 22011076
Alignment:
Q  112 aaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgttgactccttcaatgaa 210  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||| ||||||   ||||| ||| |||||||||||||| |||||    
T  22011198 aaaaccctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaag-aatttctcatgtatgttgactccttcgatgaa 22011100  T
Q  211 caagagaccacctggatcccattg 234  Q
    ||||| |||||| |||||||||||    
T  22011099 caagataccacccggatcccattg 22011076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 27952637 - 27952719
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctt 183  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  27952637 aaattattaataaaaccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagctt 27952719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 280297 - 280385
Alignment:
Q  124 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||   ||||||||||| |||| |||||||||    
T  280297 catcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaaca 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 2165706 - 2165636
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 166  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2165706 ctataaaattactaaggaaactctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 2165636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 33053241 - 33053125
Alignment:
Q  105 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 204  Q
    ||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||  |||| |||||| ||||   || ||||| |||||||      
T  33053241 tactaaggaaacccttctacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctct 33053143  T
Q  205 aatgaacaagagaccacc 222  Q
    ||| ||||||||||||||    
T  33053142 aataaacaagagaccacc 33053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 36648700 - 36648579
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat-aaagcgctttctatgcatgttgact 199  Q
    ||||||||||| |||||||||| ||| ||||||||||| || ||||||||||||| || ||||||  ||||||| |||| || ||| ||||||| |||||    
T  36648700 aaattactaaggaaaccctcctacatgagtctcctccatctatgaagaactcgactcccagttcttgttctgataaaagtgc-ttccatgcatgatgact 36648602  T
Q  200 ccttcaatgaacaagagaccacc 222  Q
    | | ||||||| |||||||||||    
T  36648601 cttccaatgaataagagaccacc 36648579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 32162225 - 32162347
Alignment:
Q  98 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 197  Q
    |||||||| ||||| ||| |||| | ||| ||||||||||| ||||||| ||||| |||  |||||||| ||||||||||| |||| | |||||||||||    
T  32162225 ataaaatt-ctaaggaaatcctcttacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttga 32162323  T
Q  198 ctccttcaatgaacaagagaccacc 222  Q
    || ||  ||||||||||||||||||    
T  32162324 ct-ctctaatgaacaagagaccacc 32162347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 18945739 - 18945646
Alignment:
Q  140 ctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgttgactccttcaatgaacaagagaccacctggatcccatt 233  Q
    ||||||| ||||||| ||||| ||||| ||||||| ||| | ||||| || |||||| |||||| ||||||||||||||||||||||||||||||    
T  18945739 ctctgaaaaactcgatcccgaattctcattctgattaagag-tttctcattcatgttaactcctgcaatgaacaagagaccacctggatcccatt 18945646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 23457462 - 23457389
Alignment:
Q  100 aaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat 174  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||||||||||   ||||||||||| |||||||    
T  23457462 aaaattactaagaaaacc-tcctacatcagtcgcctccacctctgaagaactctgacccgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 36614921 - 36614845
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 177  Q
    ||||||||||| |||||||||| | | ||||||||||| || ||||||||||||| ||||||| |  ||||||||||    
T  36614921 aaattactaaggaaaccctcctacgtgagtctcctccatctatgaagaactcgactccgagtttttgttctgataaa 36614845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 101 - 496
Target Start/End: Complemental strand, 4303234 - 4302838
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 200  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| | |||||||| |||||    
T  4303234 aaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactc 4303135  T
Q  201 cttcaatgaacaagag----accacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatag 296  Q
    || |||||||||||||     ||||| |||||||||||||||||  ||||  |||| |||||||||||| ||| | ||||| |||  |||||||||||||    
T  4303134 ctccaatgaacaagagcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatag 4303035  T
Q  297 cagactcacttgataattctgtataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaa 396  Q
    |||| ||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  |    
T  4303034 cagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttga 4302935  T
Q  397 cgaatccctttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacc 496  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  4302934 cgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaaggtttaataacat---gcagaacaccaaatggtgagagtacc 4302838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 11001090 - 11001202
Alignment:
Q  105 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 204  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| |||| | ||||||||| |||||| |    
T  11001090 tactaaggaaaccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctcc 11001189  T
Q  205 aatgaacaagaga 217  Q
    |||||| ||||||    
T  11001190 aatgaaaaagaga 11001202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 1217473 - 1217591
Alignment:
Q  102 aattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactcc 201  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| | || |||||||| | |||| |||||||| |  |||    
T  1217473 aattactaataaaaccctcctgcatcagtctcctccacctttgaagaactcga-cccgagttcacgttttgataaagagatttc-atgcatgtcgtgtcc 1217570  T
Q  202 ttcaatgaacaagagaccacc 222  Q
    | |||| ||||||||||||||    
T  1217571 tccaattaacaagagaccacc 1217591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 1369620 - 1369529
Alignment:
Q  122 tgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaa 213  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||| | ||| |||||||||||| ||||||||||    
T  1369620 tgcatgagtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaa 1369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 8915437 - 8915551
Alignment:
Q  105 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 204  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||| ||||| |||| |||||  || | | |||||||||||||||| |    
T  8915437 tactaaggaaaccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagc-tcccatgcatgttgactcctcc 8915535  T
Q  205 aatgaacaagagacca 220  Q
     |||||||||||||||    
T  8915536 gatgaacaagagacca 8915551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 1786500 - 1786424
Alignment:
Q  102 aattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 178  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  1786500 aattactaagaaaaccttcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaag 1786424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 13882995 - 13883117
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgc--atgttgac 198  Q
    |||||||||| |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||| |||||| | ||   ||||  |||||| |    
T  13882995 aaattactaataaaaccctcctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaagagattctcatgcatatgttggc 13883093  T
Q  199 tccttcaatgaacaagagaccacc 222  Q
    |||| |||| ||||||||||||||    
T  13883094 tcctccaataaacaagagaccacc 13883117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 11228551 - 11228430
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 195  Q
    |||||||||||||| | ||||| |||| ||||||||| |||| ||||| ||||||| | |||||||||||| |||| ||||||  ||| | ||||||| |    
T  11228551 ctataaaattactatggaaaccatcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatgat 11228453  T
Q  196 gactccttcaatgaacaagagac 218  Q
    |||||||  ||||||||||||||    
T  11228452 gactcctataatgaacaagagac 11228430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 7e-84; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 221 - 496
Target Start/End: Complemental strand, 37193008 - 37192736
Alignment:
Q  221 cctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatagcagactcacttgataattctgtat 320  Q
    ||||||||||||||  ||||  ||||| |||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||| ||     
T  37193008 cctggatcccattgagtgaactgtgagggtccctttttatggacaaagcagccactgagcaatgtaccaacaattgcagacgcacttgataattctatac 37192909  T
Q  321 aagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccctttttatttaagagaa 420  Q
    ||| ||||| | | ||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||  | |||||||||||||| ||||||    
T  37192908 aagctagagcattgttaagtgatgcctgaccatgttgtacttgaagtataggaatgaatgaaaccaacacagtaagtggatccctttttatttgagagaa 37192809  T
Q  421 taaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacc 496  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||   |||||||| |||||||||||||||||    
T  37192808 taaccaatatcctttttcatgaagtccaagtaaaggtttaataacat---gcagaacatcaaatggtgagagtacc 37192736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 23573365 - 23573240
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 195  Q
    ||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||| ||||| || || |||||||| |||| | |||||||||    
T  23573365 ctataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgtt 23573267  T
Q  196 gactccttcaatgaacaagagaccacc 222  Q
    ||||||| |||||||||| ||||||||    
T  23573266 gactcctccaatgaacaaaagaccacc 23573240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 22922157 - 22922227
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 166  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22922157 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 22922227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 26377849 - 26377776
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat 174  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  26377849 aaattactaagaaaaccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 22512360 - 22512435
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 176  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||    
T  22512360 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataa 22512435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 2688999 - 2688855
Alignment:
Q  98 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 197  Q
    |||||| ||||||  |||||||||| ||| |||||||||||||| |||||||||||| | ||||||||| |||| ||  || | || | |||||||||||    
T  2688999 ataaaaatactaaagaaaccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaat--agagtttcccatgcatgttga 2688902  T
Q  198 ctccttcaatgaacaagagaccacc----tggatcccattggttgaa 240  Q
    ||||| ||||||||| |||| ||||    ||||||||||||| ||||    
T  2688901 ctcctccaatgaacatgagatcaccctcatggatcccattgggtgaa 2688855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 2188719 - 2188783
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttct 165  Q
    ||||||||||| ||||| |||| | | ||||||||||| || ||||||||||||| |||||||||    
T  2188719 aaattactaaggaaaccttcctacgtgagtctcctccatctatgaagaactcgactccgagttct 2188783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 24577813 - 24577909
Alignment:
Q  124 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaagagacca 220  Q
    |||||||||||||||| ||||||||| ||||||  |||||||| |||||||| ||  |||    ||||| || |||||| |||| ||||||||||||    
T  24577813 catcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagagacca 24577909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 37193107 - 37193064
Alignment:
Q  109 aagaaaaccctcctgcatcagtctcctccacctctgaagaactc 152  Q
    |||||||||||||||||||||| | ||||| |||||||||||||    
T  37193107 aagaaaaccctcctgcatcagtttactccatctctgaagaactc 37193064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 21845197 - 21845335
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 195  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||    
T  21845197 ctataaaattactaagaaaaccctcttgcatcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgtt 21845296  T
Q  196 gactccttcaatgaacaagagaccacctggatcccattg 234  Q
    ||||||| |||||||||||| |||||| |||||||||||    
T  21845297 gactcctccaatgaacaagaaaccacccggatcccattg 21845335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 18252241 - 18252124
Alignment:
Q  105 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 204  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||||||||| || |||||||  |||||| |||||||| ||||||| |    
T  18252241 tactaaggaaaccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctcc 18252142  T
Q  205 aatgaacaagagaccacc 222  Q
    |||| |||||||||||||    
T  18252141 aatggacaagagaccacc 18252124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 19677630 - 19677672
Alignment:
Q  124 catcagtctcctccacctctgaagaactcgaccccgagttctc 166  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19677630 catcagtctcctccacctctgaagaactcgaccccgagttctc 19677672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 21849278 - 21849312
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagt 130  Q
    ||||||||||||||||||||||||| |||||||||    
T  21849278 ctataaaattactaagaaaaccctcgtgcatcagt 21849312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 21857192 - 21857226
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagt 130  Q
    ||||||||||||||||||||||||| |||||||||    
T  21857192 ctataaaattactaagaaaaccctcgtgcatcagt 21857226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 10927026 - 10926905
Alignment:
Q  97 tataaaattactaa-gaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 195  Q
    |||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||| | |||||||||    
T  10927026 tataaaattactaatgaaaatcatcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgtt 10926927  T
Q  196 gactccttcaatgaacaagaga 217  Q
    ||||||| ||||||| ||||||    
T  10926926 gactcctccaatgaataagaga 10926905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 10927934 - 10927811
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgt 194  Q
    |||||||||||||||| |||||||||| || ||||||||||||| |||||||||||||||||||||||||| |||| |||||| | ||||| ||||| ||    
T  10927934 ctataaaattactaaggaaaccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagag-tttctcatgcaagt 10927836  T
Q  195 tgactccttcaatgaacaagagacc 219  Q
    |||||| | |||| |||||||||||    
T  10927835 tgactcttacaataaacaagagacc 10927811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 13441901 - 13442015
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 200  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| ||||   | ||||||| ||||||||||| |||| | ||||||||||||||    
T  13441901 aaattactaacaaaacccttctgcatcagtctcctccacctctgaagaattcga--tcaagttctcattctgataaagagcttcccatgcatgttgactc 13441998  T
Q  201 cttcaatgaacaagaga 217  Q
    || |||||| |||||||    
T  13441999 ctccaatgagcaagaga 13442015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 23989055 - 23988929
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 195  Q
    |||| ||||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||  |||||||| || || ||||| |||| |  ||||||||    
T  23989055 ctatgaaattactaaggaaaccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgtt 23988956  T
Q  196 gactccttcaatgaacaagagaccacc 222  Q
     ||||||||||||| ||||||| ||||    
T  23988955 aactccttcaatgagcaagagatcacc 23988929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 8966022 - 8966094
Alignment:
Q  111 gaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctt 183  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  8966022 gaaaaccttcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagagctt 8966094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 31915365 - 31915240
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctcc---acctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttg 196  Q
    |||||||||| ||||||||| ||||||||||||||||   ||||||||||||||| ||||||||||||| |||| || ||| | |||| || || |||||    
T  31915365 aaattactaataaaaccctcatgcatcagtctcctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagagttttccattcattgttg 31915267  T
Q  197 actccttcaatgaacaagagaccacct 223  Q
    |||||| ||||||||||||||| ||||    
T  31915266 actcctccaatgaacaagagactacct 31915240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 40805685 - 40805571
Alignment:
Q  100 aaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgact 199  Q
    ||||||| |||| ||||  |||| |||||||||||||||||| | ||||| |||||||||||||||  ||||||||| | | ||   ||||||| |||||    
T  40805685 aaaattaataaggaaactatcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgact 40805586  T
Q  200 ccttcaatgaacaag 214  Q
    ||| | |||||||||    
T  40805585 cctccgatgaacaag 40805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 31522647 - 31522584
Alignment:
Q  113 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 176  Q
    |||||||||| |||||| | | |||||||||||||||||||||  ||||||||| |||||||||    
T  31522647 aaaccctcctacatcagccccttccacctctgaagaactcgacttcgagttctcgttctgataa 31522584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 18203265 - 18203141
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 195  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| || | |||||| | |||| |||||||||    
T  18203265 ctataaaattactgagaaa-ccctcctacatcagtctcctccacctctgaagaactcga-cccgagttctcattttaataaagagttttccatgcatgtt 18203168  T
Q  196 gactccttcaatgaacaagagaccacc 222  Q
    |||||||  ||||||||||||||||||    
T  18203167 gactcctcgaatgaacaagagaccacc 18203141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 12881852 - 12881729
Alignment:
Q  98 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 197  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  |||||||||||||||||| |||| ||| ||| |||  ||| | |||||||||||    
T  12881852 ataaaattactaaggaaaccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttga 12881754  T
Q  198 ctccttcaatgaacaagagaccacc 222  Q
    || ||||||||||||||||||||||    
T  12881753 cttcttcaatgaacaagagaccacc 12881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 22889080 - 22888963
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 200  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | |||||| |||||||    
T  22889080 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactc 22888981  T
Q  201 cttcaatgaacaagagac 218  Q
    || |||||||||||||||    
T  22888980 ctccaatgaacaagagac 22888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 34374051 - 34374167
Alignment:
Q  105 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 204  Q
    ||||||| |||||||| | ||| |||||||||||| |||||||||||| ||||||||||||| || |||||||| | || | |||||||||||||| | |    
T  34374051 tactaaggaaaccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttcc 34374150  T
Q  205 aatgaacaagagaccac 221  Q
    |||||||||||||||||    
T  34374151 aatgaacaagagaccac 34374167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 30049699 - 30049629
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 166  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30049699 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 30049629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 30051986 - 30051916
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 166  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30051986 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 30051916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 22873637 - 22873520
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 200  Q
    |||||| ||||||||||||||| |||||||||| ||||||||| | ||| |||| ||| ||||||| || |||||||| |||| | |||||| |||||||    
T  22873637 aaattattaagaaaaccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactc 22873538  T
Q  201 cttcaatgaacaagagac 218  Q
    || |||||||||||||||    
T  22873537 ctccaatgaacaagagac 22873520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 22910623 - 22910506
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 200  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | ||| || |||||||    
T  22910623 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactc 22910524  T
Q  201 cttcaatgaacaagagac 218  Q
    || |||||||||||||||    
T  22910523 ctccaatgaacaagagac 22910506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 3542026 - 3541959
Alignment:
Q  99 taaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 166  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3542026 taaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 3541959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 12778664 - 12778784
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 195  Q
    ||||| || ||||| |||||||||| | |||||||||||||||||||||||||||| |||||| | ||||| |||||||  || | || || ||||||||    
T  12778664 ctatagaaatactatgaaaaccctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgat--agagtttcctttgcatgtt 12778761  T
Q  196 gactccttcaatgaacaagagac 218  Q
    ||||||| |||||||||||||||    
T  12778762 gactcctccaatgaacaagagac 12778784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 11194443 - 11194398
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaa 146  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||    
T  11194443 aaattactaagaaaactctcctacatcagtctcctccacctctgaa 11194398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 8047661 - 8047717
Alignment:
Q  122 tgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 178  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||| ||||||    
T  8047661 tgcatcggtctcctccacctctgaagaacttgaccccgagttctaattctaataaag 8047717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 18726915 - 18726879
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtct 132  Q
    ||||||||||||||| |||||||||||||||||||||    
T  18726915 ctataaaattactaaaaaaaccctcctgcatcagtct 18726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 32361173 - 32361109
Alignment:
Q  112 aaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 176  Q
    ||||||||||| ||| ||||| |||||||||| || ||||||||| ||||||||| || ||||||    
T  32361173 aaaaccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 18720069 - 18720031
Alignment:
Q  127 cagtctcctccacctctgaagaactcgaccccgagttct 165  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattct 18720031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 22716444 - 22716318
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 195  Q
    |||| |||||||||| ||||| |  |||||||||||||||||| |||| |||||||||||||||||||||| || |||||||| |||| | || ||||||    
T  22716444 ctattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgtt 22716345  T
Q  196 gactccttcaatgaacaagagaccacc 222  Q
    ||||||| |||||||||||||||||||    
T  22716344 gactcctccaatgaacaagagaccacc 22716318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 22988773 - 22988899
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 195  Q
    |||| |||||||||| ||||| |  |||||||||||||||||| |||| |||||||||||||||||||||| || |||||||| |||| | || ||||||    
T  22988773 ctattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgtt 22988872  T
Q  196 gactccttcaatgaacaagagaccacc 222  Q
    ||||||| |||||||||||||||||||    
T  22988873 gactcctccaatgaacaagagaccacc 22988899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 10494752 - 10494628
Alignment:
Q  98 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 197  Q
    |||||| ||||||| |||||||| | ||||||||| ||| || |||||||||||||||| | ||||||  | ||||||||  |||| | |||||||| ||    
T  10494752 ataaaaatactaaggaaaccctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcga 10494653  T
Q  198 ctccttcaatgaacaagagaccacc 222  Q
    ||||| |||||||||||||||||||    
T  10494652 ctcctccaatgaacaagagaccacc 10494628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 7635092 - 7634998
Alignment:
Q  124 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaagagac 218  Q
    ||||||||||||||| ||||||||||||||||||| | ||||| |||| |||||  |||  | |||||||||||||||| | |||||||||||||    
T  7635092 catcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagagac 7634998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 13085398 - 13085471
Alignment:
Q  96 ctataaaattactaagaaaa---ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 166  Q
    ||||||||||||||| ||||   ||||||| |||||||||| |||| |||||||||||||||||||||||||||    
T  13085398 ctataaaattactaaaaaaaacaccctcctacatcagtctcttccatctctgaagaactcgaccccgagttctc 13085471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 6659640 - 6659697
Alignment:
Q  99 taaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccc 157  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  6659640 taaaattactaagaaa-ccctcctacatcagtctcctctacctctgaagaactcgaccc 6659697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 9260375 - 9260313
Alignment:
Q  116 ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 178  Q
    ||||| ||||||| ||||||| || ||| |||||||||||||||||||||  || ||||||||    
T  9260375 ccctcatgcatcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataaag 9260313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 365863 - 365983
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 200  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| || |||||||| || ||| ||| ||||||||||    
T  365863 aaattactaataaaatcctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagc-ttccatgtatgttgactc 365961  T
Q  201 cttcaatgaacaagagaccacc 222  Q
     | ||||||||| |||||||||    
T  365962 ttccaatgaacaggagaccacc 365983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 3064051 - 3064121
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttct 171  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3064051 aaattactaacaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctcgttct 3064121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 8536655 - 8536764
Alignment:
Q  113 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgttgactccttcaatgaac 211  Q
    |||||||||| |||||| ||| ||||||||| ||||||||||| |||||||||  ||||||||||  | ||||| ||  |||||||||| | ||||||||    
T  8536655 aaaccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaag-tttctcatatatgttgactcttccaatgaac 8536753  T
Q  212 aagagaccacc 222  Q
    |||||| ||||    
T  8536754 aagagatcacc 8536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 2472969 - 2473045
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 177  Q
    |||||||||| |||||| |  || |||||  |||||||| | | |||||||||||||||||||||| ||||||||||    
T  2472969 aaattactaataaaacctttgtgtatcagcttcctccacttttaaagaactcgaccccgagttctcattctgataaa 2473045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 43304270 - 43304306
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctcc 137  Q
    |||||||||| ||||||||||||||||||||||||||    
T  43304270 aaattactaataaaaccctcctgcatcagtctcctcc 43304306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 24516698 - 24516743
Alignment:
Q  119 tcctgcatcagtctcctccacctctgaagaactcgaccccgagttc 164  Q
    |||| ||||| |||||||||| || |||||||||||||||||||||    
T  24516698 tcctacatcaatctcctccacttcagaagaactcgaccccgagttc 24516743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 45923 - 45993
Alignment:
Q  96 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 166  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45923 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 45993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 10476 - 10359
Alignment:
Q  101 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 200  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | ||| || |||||||    
T  10476 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactc 10377  T
Q  201 cttcaatgaacaagagac 218  Q
    || |||||||||||||||    
T  10376 ctccaatgaacaagagac 10359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 49127 - 49018
Alignment:
Q  113 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaaca 212  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||     ||| |||||||||||||| | | |||||||    
T  49127 aaactctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaacttccatgcatgttgactcttcctatgaaca 49028  T
Q  213 agagaccacc 222  Q
     |||| ||||    
T  49027 cgagaacacc 49018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 37523 - 37484
Alignment:
Q  118 ctcctgcatcagtctcctccacctctgaagaactcgaccc 157  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  37523 ctcctacatcagtctcctccacctctgaagaactcgaccc 37484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 145555 - 145442
Alignment:
Q  105 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttgactcctt 203  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||||| || |||||||| |  ||||||||||| | | ||  | || ||||||||||||    
T  145555 tactaataaaaccctcctacatcagtctcctccacctcagaagaacttga-cccgagttattattctgataaagagttgtccgttcattgttgactcctt 145457  T
Q  204 caatgaacaagagac 218  Q
    |||||||||||||||    
T  145456 caatgaacaagagac 145442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 144177 - 144284
Alignment:
Q  114 aaccctcctgcatcagt---ctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttgactccttcaatga 209  Q
    |||||||||||||||||   |||||||| |||||||||||| || ||||||||||  ||||||||||| | | || || || ||| ||||||||| ||||    
T  144177 aaccctcctgcatcagtctcctcctccatctctgaagaacttga-cccgagttcttattctgataaagagttgtccattcattgtcgactccttcgatga 144275  T
Q  210 acaagagac 218  Q
    |||||||||    
T  144276 acaagagac 144284  T

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