View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_81 (Length: 513)
Name: NF8981_low_81
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 26639587 - 26640080
Alignment:
| Q |
1 |
tgccaggtctatattttcttctttctcattgaagtannnnnnnncttctctctttctcattaatcaaattgattagtaagcatgctctttcaatccatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26639587 |
tgccaggtctatattttcttctttctcattgaagtattttttttcttctctctttctcattaatcaaattgattagtaagcatgctctttcaatccatcc |
26639686 |
T |
|
| Q |
101 |
atatgtcacagaatacgtatagcattactacttagtattagtatattgaacaccttgtgtttttctgtttaacagtgaacttccagagttcttggggggt |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26639687 |
atatgtcacagaatatgtatagcattactacttagtattagtatattgaacaccttgtgtttttctgtttaacagtgaacttccagagttcttggggggt |
26639786 |
T |
|
| Q |
201 |
acgtgtacttgtgcagacaaaggtggttgcatgctttctgacaagggaccatggaatgatccagaaatcttgaaggtagtttcacggcagaaagat---- |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26639787 |
acgtgtacttgtgcagacaaaggtggttgcatgctttctgacaagggaccatggaatgatccagaaatcttgaaggtagtttcacggcagaaagataaaa |
26639886 |
T |
|
| Q |
297 |
nnnnnnnnttgttgtatgattagaaggataaaaaatagtgaagtgnnnnnnnnnnnnnnnnnncctgatgaattagatggttcaaaacggtgaagcaaaa |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26639887 |
aaaaaaaattgttgtatgattagaaggataaaaaatagtgaagtg--------ttttttttttcctgatgaattagatggttcaaaacggtgaagcaaaa |
26639978 |
T |
|
| Q |
397 |
tgcagaaggaaaactttatccgaagttgaggagaaaacaatcgtcgaagacgaaggagtgtgtcaaaaggtagttatcttccta---ctttatagtttca |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
26639979 |
tgcagaaggaaaactttatccgaagttgaggagaaaacaatcgtcgaagacgaaggagtgtgtcaaaaggtagttatcttcctacttctttatagtttca |
26640078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 5328186 - 5328300
Alignment:
| Q |
168 |
tttaacagtgaacttccagagttcttggggggtacgtgtacttgtgcagacaaaggtggttgcatgctttctgacaagggaccatggaatgatccagaaa |
267 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||| | |
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| T |
5328186 |
tttaccagtgaacttccggagttcttgggtggtacttgtacttgtgctgataaaggtggctgcatgctatctgacaagggtccatggaatgatccagaga |
5328285 |
T |
|
| Q |
268 |
tcttgaaggtagttt |
282 |
Q |
| |
|
||||||||||||||| |
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|
| T |
5328286 |
tcttgaaggtagttt |
5328300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 54774344 - 54774458
Alignment:
| Q |
168 |
tttaacagtgaacttccagagttcttggggggtacgtgtacttgtgcagacaaaggtggttgcatgctttctgacaagggaccatggaatgatccagaaa |
267 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||| | |
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| T |
54774344 |
tttaccagtgaacttccggagttcttgggtggtacttgtacttgtgctgataaaggtggctgcatgctatctgacaagggtccatggaatgatccagaga |
54774443 |
T |
|
| Q |
268 |
tcttgaaggtagttt |
282 |
Q |
| |
|
||||||||||||||| |
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|
| T |
54774444 |
tcttgaaggtagttt |
54774458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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