View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_82 (Length: 502)
Name: NF8981_low_82
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_82 |
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| [»] scaffold1452 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 43947633 - 43947146
Alignment:
| Q |
1 |
tctgtcgtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgtgcacatatctaatttagttaagg |
100 |
Q |
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| T |
43947633 |
tctgtcgtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgtgcacatatctaatttagttaagg |
43947534 |
T |
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| Q |
101 |
gtccacaaaaggataaatcccaataaggaaataataactataaaaattgacctcaaacacaaccataaaaagtcaaatcaagtgcttgaactcnnnnnnn |
200 |
Q |
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| T |
43947533 |
gtccacaaaaggctaaatcccaataaggaaataataactataaaaattgacctcaaacacaaccttaaaaagtcaaatcaggtgcttgaacccaaaaaaa |
43947434 |
T |
|
| Q |
201 |
gtcaaaactttctacataagttaccataataaaaacagcatgatttgattaaggtagatccaaactaactaatattatcacttaaacattaattaacaac |
300 |
Q |
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| T |
43947433 |
gtcaaaactttctacataagttaccataataaaaacagcataatttgattaaggtagatccaaactaactaatattatcacttaaacattaattaacaat |
43947334 |
T |
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| Q |
301 |
aattagtaactaaacagaaaatnnnnnnnttaccaaaggagttaaaaatcaaaactttatgagatgtgtttcaaagaaatgaaaacccataaagattaag |
400 |
Q |
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| T |
43947333 |
aattagtaactaaacaaaaaataaaaaaattaccaaaggagttaaaaatcaaaactttatgagatgtgtttcaaagaaatgaaaacccataaagattaag |
43947234 |
T |
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| Q |
401 |
catgaaattaggaggaaaccgaggaacaaggatactgattcatcaaggaggtttttccaaccctggcaatgaaaatgaaggaaaaagc |
488 |
Q |
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| T |
43947233 |
catgaaattacgaggaaaccgaggaacaaggatactgattcatcaaggaggtttttccaaccctggcaatgaaaatgaaggaaaaagc |
43947146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1452 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1452
Description:
Target: scaffold1452; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 722 - 791
Alignment:
| Q |
19 |
ttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgtgcacatatcta |
88 |
Q |
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|||||| |||||||| ||||| || ||||| || |||||||| ||||| ||||| ||||||||||||||| |
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| T |
722 |
ttctttggtgacaaagtcagcaccgattgtagctttatattgctgactgaacttcttgtgcacatatcta |
791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 16139238 - 16139157
Alignment:
| Q |
7 |
gtcaatttgaagttctttagtgacaaaatcagctccaattgttgccttatattgttgactaaacttgttgtgcacatatcta |
88 |
Q |
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| T |
16139238 |
gtcaatttgcagttcactagggacagaaccagcaccgattgtagctttatatcggtgactaaacttcttgtgcacatatcta |
16139157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 14294708 - 14294744
Alignment:
| Q |
428 |
aaggatactgattcatcaaggaggtttttccaaccct |
464 |
Q |
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| T |
14294708 |
aaggatactgattcatcaaagatgtttttccaaccct |
14294744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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