View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_85 (Length: 493)
Name: NF8981_low_85
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_85 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 35710592 - 35710966
Alignment:
| Q |
10 |
acatcatcagcagctggtattatgcaatacaacctgacatgaaacgaaaagaataacttggaccaactgcatgtgatatgatatgtcaatgtttggtaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35710592 |
acatcatcagcagctggtattatgcaatacaacctgacatgaaacgaaaagaataacttggaccaattgcatgtgatatgatatgtcaatgtttggtaag |
35710691 |
T |
|
| Q |
110 |
gctaaatagtgtcacgcgaaacgaccggacttagcatcaattagcttaataccacattggaacaaaaaattcgataaaagataatgaagaaagttgtgat |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
35710692 |
gcaaaatagtgtcacgcgaaacgaccggacttagcatcaattagcttaataccacattggaacaaaaaattcgaaaaaagataaagaagaaagttgtgat |
35710791 |
T |
|
| Q |
210 |
gctttttt---acgtgaatctcaggagcagaatcccaaatgtgcaaaatatgcgcttttgaatttatcaaagcttgttcatacatcatcattataagata |
306 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35710792 |
gctttttttacacgtgaatctcaggagcagaatcccaaatgtgcaaaatatgcacttttgaatttatcaaagcttgttcatacatcatcattataagata |
35710891 |
T |
|
| Q |
307 |
tt--aagcttttcctactgttagcgtatgttatgcactaaaacatgattaatatcatgttccatgaataagttgctt |
381 |
Q |
| |
|
|| |||| |||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35710892 |
ttagaagc-tttcttactgtt-gtgtatattatgcactaaaacatgattaatatcatgttccatgaataagttgctt |
35710966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 391 - 470
Target Start/End: Complemental strand, 47104576 - 47104497
Alignment:
| Q |
391 |
aagcaagatttattttatcccctttctcttgatcaacaaaattaaagaataattgaaataaattttaagtctttgaagtt |
470 |
Q |
| |
|
||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47104576 |
aagcaagttttatagtatcctctttttcttgatcaacaaaattaaagaataattgaaataaattttaagtctttgaagtt |
47104497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University