View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_87 (Length: 492)
Name: NF8981_low_87
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_87 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 182 - 483
Target Start/End: Complemental strand, 388306 - 388005
Alignment:
| Q |
182 |
agccgagacttgggcagttgatttcggtgtaacgaaatcggaggtggcaattgatttagagtcagttgcaacacatgagattggacatttgttgggtttg |
281 |
Q |
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| T |
388306 |
agccgagacttgggcagttgatttcggtgtaacgaaatcggaggtggcaattgatttagagtcagttgcaacacatgagattggacatttgttgggtttg |
388207 |
T |
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| Q |
282 |
tcacatagttctttgaaagaggcagtaatgtatccaagtttaaggccaagagataaaagagctgatttgaatattgatgatattaaaggtgtacaatctc |
381 |
Q |
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| T |
388206 |
tcacatagttctttgaaagaggcagtaatgtatccaagtttaaggccaagagataaaagagctgatttgaatattgatgatattaaaggtgtacaatctc |
388107 |
T |
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| Q |
382 |
tttatggttctaatcctaattttagatctcagtggtcatcattggaatctgatatctccacaaatcatggtgcaaaatttggagttgacactcacaggtt |
481 |
Q |
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| T |
388106 |
tttatggttctaatcctaattttagatctcagtggtcatcattggaatctgatatctccacaaatcatggtgcaaaatttggagttgacacttacaggtt |
388007 |
T |
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| Q |
482 |
ct |
483 |
Q |
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|| |
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| T |
388006 |
ct |
388005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 388359 - 388540
Alignment:
| Q |
2 |
caagaactccatcaaatggctcaccatcaccatggtcaccactataaaatcctatttttatatcagcgaaaccatagtcctttgattcgacgaaactaac |
101 |
Q |
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| T |
388359 |
caagaactccatcaaatggctcaccatcaccatggtcaccactataaaatcctatttttatatcagcgaaaccatagtcctctgattcgacgaaactaac |
388458 |
T |
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| Q |
102 |
tggaataactgaactccatttagagaaagctcgtttgaatgcttctcttatctcttgtatgctcaagttatgaatcatgtag |
183 |
Q |
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| T |
388459 |
tggaataactgaactccatctagagaaagctcgtttgaatgcttctcttatctcttgtatgctcaagttatgaatcatgtag |
388540 |
T |
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