View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_88 (Length: 487)
Name: NF8981_low_88
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 21516596 - 21516799
Alignment:
| Q |
17 |
aaattaaatactagtgaaatatggattatggggatcaaaaactcataccgacaccaaaaccttctttctagtgaaaggaacatttttcatgttcatcatt |
116 |
Q |
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| T |
21516596 |
aaattaaatactagtgaaatatggattatggggatcaaaaactcataccgacaccaaaaccttctttctagtgaaaggaacatttttcatgttcatcatt |
21516695 |
T |
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| Q |
117 |
aaaagaagaaagagaaaaggaaaagtaacaggtacatgacagaaagcgtccattttatttcacggattaacttctcgttcttgactactttcattcaaat |
216 |
Q |
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| T |
21516696 |
aaaagaagaaagagaaaaggaaaagtaacaggtacataacagaaagcgtctattttatttcacggattaacttctcgttcttgactactttcattcaaat |
21516795 |
T |
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| Q |
217 |
tcgt |
220 |
Q |
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|||| |
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| T |
21516796 |
tcgt |
21516799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 354 - 487
Target Start/End: Original strand, 21516939 - 21517072
Alignment:
| Q |
354 |
tccatgcatctaggtatttaacaacgactcttaattaattgaatctataacnnnnnnnttgatctatcaatctaaatcaaacgaacatcaaaataaggta |
453 |
Q |
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| T |
21516939 |
tccatgcatctaggtattcaacatcgactcttaattaattgaatatataacaaaaaaattgatctattaatctaaatcaaatgaacaccgaaataaggta |
21517038 |
T |
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| Q |
454 |
gaaaatcaaacaacgcgctacactaagatggcta |
487 |
Q |
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| T |
21517039 |
gaaaactaaacaacgcgctacactaagatggcta |
21517072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 21516831 - 21516891
Alignment:
| Q |
252 |
acatgaatgcaatcactaaaatgaatttgt-----taataaagtcacaatatcttaatagc |
307 |
Q |
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| T |
21516831 |
acatgaatgcaatcactaaaatgaatttgttaatataataaagtcacaatatcttaatagc |
21516891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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