View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_90 (Length: 482)
Name: NF8981_low_90
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_90 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 35464258 - 35464518
Alignment:
| Q |
18 |
tactatctaatagatttgaaatgctcatagaatagctaggtcacattgttttttaagggagctaggtcaaaatttataaaaacatcgagccaagcttcnn |
117 |
Q |
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| T |
35464258 |
tactatctaatggatttgaaatgctcatagaatagctaggtcacattgttttttaagggagctaggtcaaaatttataaaaacattgagccaagcttctt |
35464357 |
T |
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| Q |
118 |
nnnnnnnnnngactaaaagatccaaagcttcttgtacatattttataattccatgtgcttcaattgtcttaaacaatttttctatttcatgtagatagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35464358 |
ttttatttttgactaaaagatccaaagcttcttgtacatattttataattccatgtgcttcaattgtcttaaacaatttttctatttcatgtagatagaa |
35464457 |
T |
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| Q |
218 |
agaaaag---nnnnnnnntaataatgtatcgcaacatctccgacattaggagctagcacat |
275 |
Q |
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| T |
35464458 |
agaaaagaaaaaaaataataataatgtatcgcaacatctccgacattaggagctagcacat |
35464518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 346 - 464
Target Start/End: Original strand, 35464589 - 35464707
Alignment:
| Q |
346 |
caccacaatctctggaattgctagcttattaatttgatgagatcagaagtagtagctatggactcaaatactctaccgattgcctactatatatctatag |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35464589 |
caccacaatctctggaattgctagcttattaatttgatgagatcagaagtagtagctatggactcaaatactctaccgattgcctactatcaatctatag |
35464688 |
T |
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| Q |
446 |
tcaattgcaccataaaacc |
464 |
Q |
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| T |
35464689 |
tcaattgcaccataaaacc |
35464707 |
T |
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