View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_92 (Length: 475)
Name: NF8981_low_92
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_92 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 208 - 462
Target Start/End: Complemental strand, 8141880 - 8141626
Alignment:
| Q |
208 |
tttaccattttcagtaatgtacactggtggattgttgtatacattttttatgtgtgtaacaagatcatgaattccctttggatagacatagagccaagtt |
307 |
Q |
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| T |
8141880 |
tttaccattttcagtaatgtacactggtggattgttgtatacattttttatgtgtgtaacaagatcatgaattccctttggatagacatagagccaagtc |
8141781 |
T |
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| Q |
308 |
aaatcagtctgcacaaccaaaaatttttgcttgattaccgtaggtaagaaataacccaaaacattgtatgatattgtttacacttttattaatgtctata |
407 |
Q |
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| T |
8141780 |
aaatcagtctgcacaaccaaaaagttttgcttgattaccttaggtaagaaataacccaaaacattgtatgatattgtttacacttttattaatgtctata |
8141681 |
T |
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| Q |
408 |
caaaatattatatttaaggattgatttcaaattagagattacaatatagttattg |
462 |
Q |
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| T |
8141680 |
caaaatattatatttaaggattgatttcaaattaaagattacaatatagttattg |
8141626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 8142060 - 8141943
Alignment:
| Q |
12 |
agagatggtcatgatggtatttaatcctaacaccatctttacgagctacattgattggaactgagtcattcctatatgtagcaatgcctgaaaaatattc |
111 |
Q |
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| T |
8142060 |
agagatggtcatgatggtatttaatcctaacaccatctttacgagctacattgattggaactgagtcattcctatatgtagcaatgcctgaaaaatattc |
8141961 |
T |
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| Q |
112 |
ataaaacaaattaataat |
129 |
Q |
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| T |
8141960 |
ataaaacaaattaataat |
8141943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 8166139 - 8166008
Alignment:
| Q |
209 |
ttaccattttcagtaatgtacactggtggattgttgtatacattttttatgtgtgtaacaagatcatgaattccctttggatagacatagagccaagtta |
308 |
Q |
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| T |
8166139 |
ttaccattttcagtaatgtagactggtggattcttgtatgtatctttgatgtgtgtcacaagatgatgaattcccttcggatagacgtatagccagttca |
8166040 |
T |
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| Q |
309 |
aatcagtctgcaca-accaaaaatttttgctt |
339 |
Q |
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| T |
8166039 |
aatccgtctgcacagaccataaagttttgctt |
8166008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 8167224 - 8167127
Alignment:
| Q |
25 |
atggtatttaatcctaacaccatctttacgagctacattgattggaactgagtcattcctatatgtagcaatgcctgaaaaatattcataaaacaaat |
122 |
Q |
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| T |
8167224 |
atggtatctgatcctaataccatctttacgggctacgttgactggtattgagtcattccttgattgaccaatgcctgaaacatattcacaaaacaaat |
8167127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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