View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_96 (Length: 467)

Name: NF8981_low_96
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_96
NF8981_low_96
[»] chr1 (10 HSPs)
chr1 (1-375)||(17596073-17596448)
chr1 (141-375)||(30747842-30748076)
chr1 (141-375)||(30769293-30769527)
chr1 (372-459)||(17596530-17596617)
chr1 (3-182)||(30746425-30746601)
chr1 (3-182)||(30767876-30768052)
chr1 (232-339)||(19883245-19883355)
chr1 (288-371)||(30746656-30746738)
chr1 (288-371)||(30768107-30768189)
chr1 (237-315)||(39440741-39440820)
[»] chr7 (12 HSPs)
chr7 (3-353)||(16252674-16253023)
chr7 (9-310)||(16301522-16301828)
chr7 (372-459)||(16253115-16253203)
chr7 (375-448)||(16301300-16301373)
chr7 (111-182)||(5057442-5057511)
chr7 (217-336)||(5057298-5057421)
chr7 (236-311)||(1781016-1781092)
chr7 (234-285)||(2476874-2476926)
chr7 (217-301)||(25992046-25992133)
chr7 (140-174)||(20176239-20176273)
chr7 (385-453)||(5057095-5057164)
chr7 (236-264)||(26572975-26573003)
[»] chr6 (5 HSPs)
chr6 (9-353)||(6633340-6633688)
chr6 (211-371)||(18626515-18626676)
chr6 (372-459)||(6633149-6633236)
chr6 (9-137)||(18626385-18626513)
chr6 (378-459)||(18626762-18626843)
[»] chr4 (10 HSPs)
chr4 (56-375)||(9273481-9273799)
chr4 (101-376)||(5066515-5066775)
chr4 (56-372)||(9253510-9253825)
chr4 (372-448)||(9253910-9253986)
chr4 (372-448)||(9273881-9273958)
chr4 (9-182)||(11489624-11489795)
chr4 (375-435)||(8912181-8912241)
chr4 (232-318)||(51461402-51461489)
chr4 (236-313)||(4225206-4225284)
chr4 (382-453)||(5066867-5066939)
[»] chr2 (4 HSPs)
chr2 (113-375)||(30969485-30969746)
chr2 (372-459)||(30972002-30972090)
chr2 (231-375)||(5369799-5369944)
chr2 (111-167)||(5369694-5369748)
[»] chr3 (3 HSPs)
chr3 (108-320)||(16221213-16221427)
chr3 (372-459)||(32202807-32202895)
chr3 (381-448)||(33797722-33797790)
[»] chr8 (3 HSPs)
chr8 (372-448)||(15258389-15258466)
chr8 (245-310)||(25233519-25233585)
chr8 (235-283)||(30122598-30122647)
[»] chr5 (2 HSPs)
chr5 (376-459)||(24884681-24884765)
chr5 (232-310)||(20625837-20625916)
[»] scaffold0004 (1 HSPs)
scaffold0004 (9-159)||(382653-382801)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 17596073 - 17596448
Alignment:
Q  1 taggaacctgcagcgtggattgtagatgcatcgctgaagatgtggaaagttgcagcatcctgggactctagccaggccgtaaatagtacacatgcgtagg 100  Q
    |||||| ||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| |||||||||| || |||| ||||||| ||  | | ||    
T  17596073 taggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagatgcagcatcctgagactctagccgggtcgtacatagtacgcacacatggg 17596172  T
Q  101 tccagtttgtccattgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaagaataaaagaatatgacggtgggtaggtaggat 200  Q
    |||||| ||||||||  ||||||| |||||||| |||   |||| ||||||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  17596173 tccagtctgtccattttttaatgaggaagaatacgagt--tgtcaccaatgattggaatcctaggaagaataaaggaatatgtcagtgggtaggtaggat 17596270  T
Q  201 tggataagcatggatggataaggacaatccatgtaaaatgatcaaagggtacaacttgtagt-ggtggacttgtcctataaaagaatacccatgtgttag 299  Q
    |||||||| |  ||||||||||||||  ||||||||| |||  ||||||||||||||||||| ||| || |||| ||||||||| | |||||||||||||    
T  17596271 tggataaggactgatggataaggacatcccatgtaaagtgactaaagggtacaacttgtagtgggtagaattgtactataaaaggacacccatgtgttag 17596370  T
Q  300 tgccaagggtccgataattcattttataattggaga--gaccgggttacggctaggattaacaacttttgagatctca 375  Q
    |||||||||||| | ||||||| ||| ||||||| |  | || ||||||||||||| |||  | |||| |||||||||    
T  17596371 tgccaagggtccaaaaattcatcttagaattggaaaaggtccaggttacggctagggttagtagctttagagatctca 17596448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 141 - 375
Target Start/End: Original strand, 30747842 - 30748076
Alignment:
Q  141 tgtccccaatgattggaatcctaggaagaataaaagaatatgacggtgggtaggtaggattggataagcatggatggataaggacaatccatgtaaaatg 240  Q
    ||||| || ||| ||||||||||||| ||||||||||||||| |  |||| ||||| ||||||||||| | |||||||||||||||| |||| |||||||    
T  30747842 tgtcctcattgaatggaatcctaggatgaataaaagaatatgccaatgggaaggtaagattggataaggagggatggataaggacaacccatttaaaatg 30747941  T
Q  241 atcaaagggtacaacttgtagt-ggtggacttgtcctataaaagaatacccatgtgttagtgccaagggtccgataattcattttataattggagagacc 339  Q
    | |||| ||||||||||||||| ||||| ||||| ||||||| | |  |||  |||||| |||||| |||| || ||||||| ||| |||||||||| ||    
T  30747942 accaaaaggtacaacttgtagtgggtggccttgtactataaacggacccccgagtgttaatgccaa-ggtcggaaaattcatcttagaattggagaggcc 30748040  T
Q  340 gggttacggctaggattaacaacttttgagatctca 375  Q
     ||||||||||||| ||||||| ||| |||||||||    
T  30748041 aggttacggctagggttaacaaatttagagatctca 30748076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 141 - 375
Target Start/End: Original strand, 30769293 - 30769527
Alignment:
Q  141 tgtccccaatgattggaatcctaggaagaataaaagaatatgacggtgggtaggtaggattggataagcatggatggataaggacaatccatgtaaaatg 240  Q
    ||||| || ||| ||||||||||||| ||||||||||||||| |  |||| ||||| ||||||||||| | |||||||||||||||| |||| |||||||    
T  30769293 tgtcctcattgaatggaatcctaggatgaataaaagaatatgccaatgggaaggtaagattggataaggagggatggataaggacaacccatttaaaatg 30769392  T
Q  241 atcaaagggtacaacttgtagt-ggtggacttgtcctataaaagaatacccatgtgttagtgccaagggtccgataattcattttataattggagagacc 339  Q
    | |||| ||||||||||||||| ||||| ||||| ||||||| | |  |||  |||||| |||||| |||| || ||||||| ||| |||||||||| ||    
T  30769393 accaaaaggtacaacttgtagtgggtggccttgtactataaacggacccccgagtgttaatgccaa-ggtcggaaaattcatcttagaattggagaggcc 30769491  T
Q  340 gggttacggctaggattaacaacttttgagatctca 375  Q
     ||||||||||||| ||||||| ||| |||||||||    
T  30769492 aggttacggctagggttaacaaatttagagatctca 30769527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 372 - 459
Target Start/End: Original strand, 17596530 - 17596617
Alignment:
Q  372 ctcaccttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttag-tttctatgttttcattgatgtccatct 459  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||    
T  17596530 ctcaccttattcctt-aaggattgtaatctcgtgacaactctatctattctattcatttagttttctatgttttcatttatttccatct 17596617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 30746425 - 30746601
Alignment:
Q  3 ggaacctgcagcgtggattgtagatgcatcgctgaagatgtggaaagttgcagcatcctgggactctagccaggccgtaaatagtacacatgcgtaggtc 102  Q
    |||| ||||||||||||||| ||||| ||| ||||||||||| ||||||||||| |||| ||||||||||  || |||| |||||||   |||||  ||     
T  30746425 ggaagctgcagcgtggattgaagatgtatcactgaagatgtgaaaagttgcagcgtcctaggactctagctgggtcgtacatagtacgagtgcgtgagtt 30746524  T
Q  103 cagtttgtccattgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaagaataaaagaatatg 182  Q
    |||| | ||| ||||||||||| ||| |||||  ||| ||||| |||||| || ||||||||||| ||||||||||||||    
T  30746525 cagtctctcc-ttgcttaatgaggaataatat--gagttgtcctcaatgaatgaaatcctaggaaaaataaaagaatatg 30746601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 30767876 - 30768052
Alignment:
Q  3 ggaacctgcagcgtggattgtagatgcatcgctgaagatgtggaaagttgcagcatcctgggactctagccaggccgtaaatagtacacatgcgtaggtc 102  Q
    |||| ||||||||||||||| ||||| ||| ||||||||||| ||||||||||| |||| ||||||||||  || |||| |||||||   |||||  ||     
T  30767876 ggaagctgcagcgtggattgaagatgtatcactgaagatgtgaaaagttgcagcgtcctaggactctagctgggtcgtacatagtacgagtgcgtgagtt 30767975  T
Q  103 cagtttgtccattgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaagaataaaagaatatg 182  Q
    |||| | ||| ||||||||||| ||| |||||  ||| ||||| |||||| || ||||||||||| ||||||||||||||    
T  30767976 cagtctctcc-ttgcttaatgaggaataatat--gagttgtcctcaatgaatgaaatcctaggaaaaataaaagaatatg 30768052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 19883355 - 19883245
Alignment:
Q  232 tgtaaaatgatcaaagggtacaacttgtagtgg-tggacttgtcctataaaagaatacccatgtgtt--agtgccaagggtccgataattcattttataa 328  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| ||||| ||| | | |||||||||   ||||||||| ||| | |||||||| || ||    
T  19883355 tgtaaaatgaccaaagggtacaacttgtagtggttggccttgtactatagaaggacaaccatgtgttggtgtgccaaggatccaaaaattcattatagaa 19883256  T
Q  329 ttggagagacc 339  Q
    |||||||||||    
T  19883255 ttggagagacc 19883245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 30746656 - 30746738
Alignment:
Q  288 cccatgtgttagtgccaagggtccgataattcattttataattggagagaccgggttacggctaggattaacaacttttgagat 371  Q
    |||||||||||||||||||| ||||| |||||||  || |||||||||  || ||||||||||||| ||||||| ||| |||||    
T  30746656 cccatgtgttagtgccaagg-tccgaaaattcatcatagaattggagatgccaggttacggctagggttaacaaatttagagat 30746738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 30768107 - 30768189
Alignment:
Q  288 cccatgtgttagtgccaagggtccgataattcattttataattggagagaccgggttacggctaggattaacaacttttgagat 371  Q
    |||||||||||||||||||| ||||| |||||||  || |||||||||  || ||||||||||||| ||||||| ||| |||||    
T  30768107 cccatgtgttagtgccaagg-tccgaaaattcatcatagaattggagatgccaggttacggctagggttaacaaatttagagat 30768189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 39440820 - 39440741
Alignment:
Q  237 aatgatcaaagggtacaacttgtagtgg-tggacttgtcctataaaagaatacccatgtgttagtgccaagggtccgata 315  Q
    |||||| ||||||||||||||||||||| ||| ||| | ||||||||| | | |||  |||||||| |||||||||||||    
T  39440820 aatgataaaagggtacaacttgtagtggttggtcttatactataaaaggacaaccacatgttagtgtcaagggtccgata 39440741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 3 - 353
Target Start/End: Original strand, 16252674 - 16253023
Alignment:
Q  3 ggaacctgcagcgtggattgtagatgcatcgctgaagatgtggaaagttgcagcatcctgggactctagccaggccgtaaatagtacacatgcgtaggtc 102  Q
    |||| ||||| | ||||||| | ||| |||||||||||||||||||||||||  ||| ||||||||||||| || |||| |||||||   | ||| ||||    
T  16252674 ggaagctgcaacatggattgaaaatgtatcgctgaagatgtggaaagttgcaatatcttgggactctagccgggtcgtacatagtacgagtacgtgggtc 16252773  T
Q  103 cagtttgtccattgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaagaataaaagaatatgacggtgggtaggtaggattg 202  Q
    || |||||||||| |||||| | ||||||||||||   |||||||||| ||||||||||||||||||||||| |||| || |  |||||||||||||| |    
T  16252774 caatttgtccatttcttaataaggaagaatatgagt--tgtccccaattattggaatcctaggaagaataaaggaatttgtcaatgggtaggtaggatcg 16252871  T
Q  203 gataagcatggatggataaggacaatccatgtaaaatgatcaaagggtacaacttgtag-tggtggacttgtcctataaaagaatacccatgtgttagtg 301  Q
    |||||| | |||||||||||||||| ||||||||||||| ||||| |||||||||||||   |||| ||||| ||||||| | | || ||||||||||||    
T  16252872 gataaggacggatggataaggacaacccatgtaaaatgaccaaagagtacaacttgtagaaagtggccttgtactataaatggacacacatgtgttagtg 16252971  T
Q  302 ccaagggtccgataattcattttataattggagagaccgggttacggctagg 353  Q
    | |||||||||| |||| |  ||| |||||||||| ||  |||| |||||||    
T  16252972 caaagggtccgaaaatttaccttagaattggagagcccaagttatggctagg 16253023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 16301828 - 16301522
Alignment:
Q  9 tgcagcgtggattgtagatgcatcgctgaagatgtggaaagttgcagcatcctgggactctagccaggccgtaaatagtac----acatg--cgtaggtc 102  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||||  ||| ||||||| ||| | || |||| |||||||    ||  |  ||| ||||    
T  16301828 tgcaacgtggattgaagatgtatcgctgaagatgtggaaagttgcaaaatcatgggactttagtcgggtcgtacatagtacgagtacgagtacgtgggtc 16301729  T
Q  103 cagtttgtccattgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaagaataaaagaatatgacggtgggtaggtaggattg 202  Q
    |||| ||||||||||||||| | ||||||||||||   | ||||||||||||||||| ||||||||||||||  ||||      |||||||||| |||||    
T  16301728 cagtctgtccattgcttaataaggaagaatatgagt--tttccccaatgattggaattctaggaagaataaagaaataaattaatgggtaggtatgattg 16301631  T
Q  203 gataagcatggatggataaggacaatccatgtaaaatgatcaaagggtacaacttgtagt-ggtggacttgtcctataaaagaatacccatgtgttagtg 301  Q
    |||||| | |||||||||||||||| |||||||||| || ||||||||||||| |||||| ||||| ||| |  |||||||| | |||||||||||||||    
T  16301630 gataaggacggatggataaggacaacccatgtaaaaggaccaaagggtacaacctgtagtgggtggccttctaatataaaaggacacccatgtgttagtg 16301531  T
Q  302 ccaagggtc 310  Q
     ||||||||    
T  16301530 tcaagggtc 16301522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 372 - 459
Target Start/End: Original strand, 16253115 - 16253203
Alignment:
Q  372 ctcaccttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttag-tttctatgttttcattgatgtccatct 459  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||| |||| |||||    
T  16253115 ctcaccttattccttcaaggattgtaatcttatgacaactctatctaatctatcaatttagttttctatgttttcatttatgttcatct 16253203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 16301373 - 16301300
Alignment:
Q  375 accttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttagtttctatgttttcatt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||| ||||||||||||    
T  16301373 accttattccttcaaggattgtaatcttgtgacaactctatctaatttatcaatttattttttatgttttcatt 16301300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 5057511 - 5057442
Alignment:
Q  111 ccattgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaagaataaaagaatatg 182  Q
    |||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||| |||||| |||||||    
T  5057511 ccattgcttaatgaggaagaatatgagt--tgtccccaatgattgaaatcctaggaataataaaggaatatg 5057442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 336
Target Start/End: Complemental strand, 5057421 - 5057298
Alignment:
Q  217 gataaggacaatccat--gtaaaatgatcaaagggtacaacttgtagtggtggacttgtcct--ataaaagaatacccatgtgttagtgccaagggtccg 312  Q
    ||||||||||| ||||  ||||||||| |||| |||||||||||||||||| | | | |  |  | ||||| ||| |||| |||||||||||||||||||    
T  5057421 gataaggacaacccatttgtaaaatgaccaaatggtacaacttgtagtggttgtcctttttttaaaaaaaggataaccatttgttagtgccaagggtccg 5057322  T
Q  313 ataattcattttataattggagag 336  Q
    | | ||||| ||| ||||||||||    
T  5057321 aaagttcatcttagaattggagag 5057298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 1781092 - 1781016
Alignment:
Q  236 aaatgatcaaagggtacaacttgtagtggtggac-ttgtcctataaaagaatacccatgtgttagtgccaagggtcc 311  Q
    |||||||||| ||||||||||||||||||| ||| |||| |||||||   ||| |||  ||||||||||||||||||    
T  1781092 aaatgatcaatgggtacaacttgtagtggttgacattgtactataaaccgataaccacatgttagtgccaagggtcc 1781016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 2476926 - 2476874
Alignment:
Q  234 taaaatgatcaaagggtacaacttgtagtggtgga-cttgtcctataaaagaa 285  Q
    |||||||||||||||||||||||||||||||| || ||||| |||| ||||||    
T  2476926 taaaatgatcaaagggtacaacttgtagtggttgaccttgtactattaaagaa 2476874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 25992133 - 25992046
Alignment:
Q  217 gataaggacaatccatgt--aaaatgatcaaagggtacaacttgtagtggt-ggacttgtcctataaaagaatacccatgtgttagtg 301  Q
    ||||||||||| ||||||  ||||||  ||||| ||||||||| ||||||| || ||||| ||||||||| ||| |||||||||||||    
T  25992133 gataaggacaacccatgtgtaaaatggccaaagagtacaacttttagtggttggtcttgtactataaaaggataaccatgtgttagtg 25992046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 20176239 - 20176273
Alignment:
Q  140 atgtccccaatgattggaatcctaggaagaataaa 174  Q
    |||||||||||||||||||||||||||| ||||||    
T  20176239 atgtccccaatgattggaatcctaggaataataaa 20176273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 453
Target Start/End: Complemental strand, 5057164 - 5057095
Alignment:
Q  385 ttcaaggattgtaatcttgtgacaactctatctattctattaatttag-tttctatgttttcattgatgt 453  Q
    ||||||||||||||||||||   |||| ||| || ||||| ||||||| |||||||||||||||| ||||    
T  5057164 ttcaaggattgtaatcttgtcctaactatatttaatctatcaatttagttttctatgttttcatttatgt 5057095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 26573003 - 26572975
Alignment:
Q  236 aaatgatcaaagggtacaacttgtagtgg 264  Q
    |||||||||||||||||||||||||||||    
T  26573003 aaatgatcaaagggtacaacttgtagtgg 26572975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 353
Target Start/End: Complemental strand, 6633688 - 6633340
Alignment:
Q  9 tgcagcgtggattgtagatgcatcgctgaagatgtggaaagttgcagcatcctgggactctagccaggccgtaaatagtacacatgcgtaggtccagttt 108  Q
    ||||| |||||||| ||||| |||||||||||||| || || |||||| |||||||||||||| | || | || ||||||| || | || |||||| | |    
T  6633688 tgcagagtggattgaagatgtatcgctgaagatgtcgagagctgcagcgtcctgggactctagtcgggtcatacatagtacgcaggtgtgggtccaatat 6633589  T
Q  109 gtccattgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaagaataaaagaatatgacggtgggtaggtaggattggataag 208  Q
    |||||||||||||||   |||||||||||   ||||||  ||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||    
T  6633588 gtccattgcttaatgcgaaagaatatgagc--tgtccctgatgattggaatcctaggaagaataaaagaatatgctagttggtaggtaggattggataag 6633491  T
Q  209 catggatggata-----aggacaatccatgtaaaatgatcaaagggtacaacttgtagt-ggtggacttgtcctataaaagaatacccatgtgttagtgc 302  Q
     | |||||||||     | ||||| ||| ||||||||| |||| |||||||||| |||| ||||| ||||| |||| |||| ||||||||||||||||||    
T  6633490 gacggatggataacgacaagacaacccaagtaaaatgaccaaatggtacaacttatagtgggtggccttgtactattaaaggatacccatgtgttagtgc 6633391  T
Q  303 caagggtccgataattcattttataattggagagaccgggttacggctagg 353  Q
    |||| |||||| ||||||| ||| |||||||||| ||  ||||||||||||    
T  6633390 caagtgtccgaaaattcatcttagaattggagaggccatgttacggctagg 6633340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 211 - 371
Target Start/End: Original strand, 18626515 - 18626676
Alignment:
Q  211 tggatggataaggacaatccatgtaaaatgatcaaagggtacaacttgtagtgg-tggacttgtcctataaaagaatacccatgtgttagtgccaagggt 309  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| | |||  |||||||| | |||||||||||||||||||||||    
T  18626515 tggatggataaggacaacccatgtaaaatgaacaaagggtacaacttgtagtgggtggccatgtattataaaaggacacccatgtgttagtgccaagggt 18626614  T
Q  310 ccgataattcattttataattggagagaccgggttacggctaggattaacaacttttgagat 371  Q
     ||| ||||||  |||||||||||||| || |||||| |||||| ||| ||||||| |||||    
T  18626615 tcgaaaattcaccttataattggagaggccaggttacagctagggttatcaactttagagat 18626676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 372 - 459
Target Start/End: Complemental strand, 6633236 - 6633149
Alignment:
Q  372 ctcaccttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttagtttctatgttttcattgatgtccatct 459  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||||| || |||||||    
T  6633236 ctcaccttattccttcaaggattataatcttgtggcaactctgtctattatattaatttagtttctatgttttcatttatttccatct 6633149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 18626385 - 18626513
Alignment:
Q  9 tgcagcgtggattgtagatgcatcgctgaagatgtggaaagttgcagcatcctgggactctagccaggccgtaaatagtacacatgcgtaggtccagttt 108  Q
    |||||||||||||| ||||| |||| ||||||||||||||  ||||||||||||  ||||||| | || | || ||||||  ||| ||| |||| ||| |    
T  18626385 tgcagcgtggattgaagatgtatcgttgaagatgtggaaaactgcagcatcctgaaactctagtcgggtcatacatagtatgcatacgttggtctagtat 18626484  T
Q  109 gtccattgcttaatgaagaagaatatgag 137  Q
    ||||||| |||||||| ||||||||||||    
T  18626485 gtccatttcttaatgaggaagaatatgag 18626513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 459
Target Start/End: Original strand, 18626762 - 18626843
Alignment:
Q  378 ttattccttcaaggattgtaatcttgtgacaactctatctattctattaattta-gtttctatgttttcattgatgtccatct 459  Q
    |||||| || ||||||||||||||||||||||||||||||||| ||||||||||  ||||||| |||| ||| || |||||||    
T  18626762 ttattctttaaaggattgtaatcttgtgacaactctatctatt-tattaatttatttttctatatttttatttatttccatct 18626843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 56 - 375
Target Start/End: Original strand, 9273481 - 9273799
Alignment:
Q  56 catcctgggactctagccaggccgtaaatagtacacatgcgtaggtccagtttgtccattgcttaatgaagaagaatatgagagatgtccccaatgattg 155  Q
    |||||||||||||||| ||||  ||| ||||||||||| ||| || | ||| |||||||| |||||  | |||| ||||||||  |||||||||||||||    
T  9273481 catcctgggactctagtcaggttgtacatagtacacatacgtggggctagtctgtccatttcttaacaaggaagcatatgaga--tgtccccaatgattg 9273578  T
Q  156 gaatcctaggaagaataaaagaatatgacggtgggtaggtaggattggataagcatggatggataaggacaatccatgtaaaatgatcaaagggtacaac 255  Q
    || ||||| ||||||||||||||||||    | |||||||||||||||||||| | ||||||||||| |||  ||||||||||||| |||||||||||||    
T  9273579 gattcctaagaagaataaaagaatatgctatttggtaggtaggattggataaggacggatggataagaacagcccatgtaaaatgaccaaagggtacaac 9273678  T
Q  256 ttgtagt-ggtggacttgtcctataaaagaatacccatgtgttagtgccaagggtccgataattcattttataattggagagaccgggttacggctagga 354  Q
    ||||||| ||| | ||||| |||||||||   |||| |||||||||| ||||||||  | ||||||  ||| ||||||| ||  | ||||||| |||||     
T  9273679 ttgtagtgggttgccttgtactataaaagggcacccgtgtgttagtgtcaagggtctaaaaattcaccttagaattggaaaggtcaggttacgactaggg 9273778  T
Q  355 ttaacaacttttgagatctca 375  Q
    ||| || |||| |||||||||    
T  9273779 ttagcagctttagagatctca 9273799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 376
Target Start/End: Original strand, 5066515 - 5066775
Alignment:
Q  101 tccagtttgtccattgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaagaataaaagaatatgacggtgggtaggtaggat 200  Q
    |||||| ||||||||||||||| | ||| ||||||||   |||||||||||||||| ||||||||||||||||||| ||| |   |||||||||||||||    
T  5066515 tccagtatgtccattgcttaattaggaataatatgagt--tgtccccaatgattgggatcctaggaagaataaaagcatacgttagtgggtaggtaggat 5066612  T
Q  201 tggataagcatggatggataaggacaatccatgtaaaatgatcaaagggtacaacttgtagt-ggtggacttgtcctataaaagaatacccatgtgttag 299  Q
    ||||              ||||||||| | ||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||    
T  5066613 tgga--------------taaggacaacctatgtaaaatgaccaaagggtacaacttgtagtgggtggccttgtactataaaagaacacccatgtgttag 5066698  T
Q  300 tgccaagggtccgataattcattttataattggagagaccgggttacggctaggattaacaacttttgagatctcac 376  Q
    || || || | ||| ||||| |  || |||||||||| || ||||||| ||| | |||||| |||| | ||||||||    
T  5066699 tgtcatggattcgaaaattcttcctagaattggagaggccaggttacgactacggttaacagctttagcgatctcac 5066775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 56 - 372
Target Start/End: Original strand, 9253510 - 9253825
Alignment:
Q  56 catcctgggactctagccaggccgtaaatagtacacatgcgtaggtccagtttgtccattgcttaatgaagaagaatatgagagatgtccccaatgattg 155  Q
    |||||||||||||||| | ||  ||| ||||||||||| ||| || ||||| |||||||| |||||  | |||| ||||||||  |||||| ||| ||||    
T  9253510 catcctgggactctagtcgggttgtacatagtacacatacgtggggccagtctgtccatttcttaacaaggaagcatatgaga--tgtccctaataattg 9253607  T
Q  156 gaatcctaggaagaataaaagaatatgacggtgggtaggtaggattggataagcatggatggataaggacaatccatgtaaaatgatcaaagggtacaac 255  Q
    || ||||| ||||||||||||||||||    | ||||| |||||||||||||| | ||||||||||| |||  |||||||||||||  ||| ||||||||    
T  9253608 gattcctaagaagaataaaagaatatgctatttggtagctaggattggataaggacggatggataagaacagcccatgtaaaatgactaaaaggtacaac 9253707  T
Q  256 ttgtagt-ggtggacttgtcctataaaagaatacccatgtgttagtgccaagggtccgataattcattttataattggagagaccgggttacggctagga 354  Q
    ||||||| ||| | ||||| |||||| ||  ||||| |||||| ||  ||||||||  | ||||||  ||| ||||||| ||  | ||||||| |||||     
T  9253708 ttgtagtgggttgccttgtactataagagggtacccgtgtgtttgtatcaagggtctaaaaattcaccttagaattggaaaggtcaggttacgactaggg 9253807  T
Q  355 ttaacaacttttgagatc 372  Q
    ||| || |||| ||||||    
T  9253808 ttagcagctttagagatc 9253825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 372 - 448
Target Start/End: Original strand, 9253910 - 9253986
Alignment:
Q  372 ctcaccttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttagtttctatgttttcatt 448  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||    
T  9253910 ctcaccttattccttcaaggattgtaatcttgcgataactctacctattctattaatttagtttctatgttttcatt 9253986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 372 - 448
Target Start/End: Original strand, 9273881 - 9273958
Alignment:
Q  372 ctcaccttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttag-tttctatgttttcatt 448  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||    
T  9273881 ctcaccttattccttcaaggattgtaatcttgcgacaactcgatctattctattaatttagttttctatgttttcatt 9273958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 11489795 - 11489624
Alignment:
Q  9 tgcagcgtggattgtagatgcatcgctgaagatgtggaaagttgcagcatcctgggactctagccaggccgtaaatagtacacatgcgtaggtccagttt 108  Q
    |||||||||||||| |||||||| ||| | ||| ||| ||| ||||||| |||||||||||||   |  | || |||||||   | ||| |||| ||| |    
T  11489795 tgcagcgtggattgaagatgcattgcttaggatttgggaagctgcagcaccctgggactctagttggttcatacatagtacgagtacgtgggtctagtct 11489696  T
Q  109 gtccattgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaagaataaaagaatatg 182  Q
    |||||||||||||||| |||||||||  ||| |||||| |||||||| ||||||| ||| |||||  |||||||    
T  11489695 gtccattgcttaatgaggaagaatat--gagttgtcccaaatgattgaaatcctatgaataataagggaatatg 11489624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 8912181 - 8912241
Alignment:
Q  375 accttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttagttt 435  Q
    |||||||||||| |||||||||| ||||||||||||||||  ||||| |||||||||||||    
T  8912181 accttattcctttaaggattgtagtcttgtgacaactctacttattcaattaatttagttt 8912241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 51461402 - 51461489
Alignment:
Q  232 tgtaaaatgatcaaagggtacaacttgtagtgg-tggacttgtcctataaaagaatacccatgtgttagtgccaagggtccgataatt 318  Q
    |||||||||| |||||||||||||||||||||| | | |||||  |||||||| | | | ||||| | ||||||||||||||| ||||    
T  51461402 tgtaaaatgaccaaagggtacaacttgtagtggtttgccttgtaatataaaaggacaactatgtgatggtgccaagggtccgaaaatt 51461489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 4225206 - 4225284
Alignment:
Q  236 aaatgatcaaagggtacaacttgtagtggtgga-cttgtcctataaaagaatacccatgtgttagtgccaagggtccga 313  Q
    |||||| ||||||||||||||||||||||| || ||||| ||||| ||| | | ||||||| |||||| | ||||||||    
T  4225206 aaatgaccaaagggtacaacttgtagtggttgaccttgtactatataaggacaaccatgtggtagtgctaggggtccga 4225284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 453
Target Start/End: Original strand, 5066867 - 5066939
Alignment:
Q  382 tccttcaaggattgtaatcttgtgacaactctatctattctattaatttag-tttctatgttttcattgatgt 453  Q
    ||||||||||||||||||| || |  |||||||| || ||||| ||||||| |||||||||||| ||| ||||    
T  5066867 tccttcaaggattgtaatcatgagctaactctatttaatctatcaatttagttttctatgttttgatttatgt 5066939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 113 - 375
Target Start/End: Original strand, 30969485 - 30969746
Alignment:
Q  113 attgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaagaataaaagaatatgacggtgggtaggtaggattggataagcatg 212  Q
    |||||||||||| ||||||||||||   ||||||||||||||||||||||| |||| |||||| ||||||   ||||||||||||||||||||||| | |    
T  30969485 attgcttaatgaggaagaatatgagt--tgtccccaatgattggaatcctatgaagtataaaataatatgctagtgggtaggtaggattggataaggacg 30969582  T
Q  213 gatggataaggacaatccatgtaaaatgatcaaagggtacaacttgtagt-ggtggacttgtcctataaaagaatacccatgtgttagtgccaagggtcc 311  Q
    |||||||||||| ||  ||  |||||||| |||||||||||||||||||| ||||  ||||| ||||||||| | |  ||||||||||| ||||||| ||    
T  30969583 gatggataaggaaaacacaaataaaatgaccaaagggtacaacttgtagtgggtgaccttgtactataaaaggacaatcatgtgttagttccaagggccc 30969682  T
Q  312 gataattcattttataattggagagaccgggttacggctaggattaacaacttttgagatctca 375  Q
     | ||||||  ||| |||| ||||   ||||||| ||||| | |||||| ||||  ||||||||    
T  30969683 taaaattcaccttagaattagagacgtcgggttatggctaaggttaacagctttatagatctca 30969746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 372 - 459
Target Start/End: Original strand, 30972002 - 30972090
Alignment:
Q  372 ctcaccttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttag-tttctatgttttcattgatgtccatct 459  Q
    ||||||||||||||||||  |||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||| || |||||||    
T  30972002 ctcaccttattccttcaaatattgtaatcttgggataactctatctattctattaatttagttttctatgttttaatttatttccatct 30972090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 375
Target Start/End: Original strand, 5369799 - 5369944
Alignment:
Q  231 atgtaaaatgatcaaagggtacaacttgtagtgg-tggacttgtcctataaaagaatacccatgtgttagtgccaagggtccgataattcattttataat 329  Q
    |||| |||||| |||||||||||||||||||||| ||| ||||| ||||||||| | | | ||||||  ||||||| ||||| | ||||||||  | |||    
T  5369799 atgtgaaatgaccaaagggtacaacttgtagtggttggccttgtactataaaaggacaacaatgtgtcggtgccaatggtccaaaaattcattacagaat 5369898  T
Q  330 tggagagaccgggttacggctaggattaacaacttttgagatctca 375  Q
    ||||||| || | ||||||||| | ||| ||||||| ||| |||||    
T  5369899 tggagaggccagtttacggctatggttagcaactttagagttctca 5369944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 5369694 - 5369748
Alignment:
Q  111 ccattgcttaatgaagaagaatatgagagatgtccccaatgattggaatcctaggaa 167  Q
    |||||||||||||| |||||||||  ||| ||||||||||||||| |||||||||||    
T  5369694 ccattgcttaatgaggaagaatat--gagctgtccccaatgattgaaatcctaggaa 5369748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 108 - 320
Target Start/End: Complemental strand, 16221427 - 16221213
Alignment:
Q  108 tgtccattgcttaatgaagaagaatatgagagatgtcccca-atgattggaatcctaggaagaataaaagaatatgacggtgggtaggtaggattggata 206  Q
    |||||||| ||||||||  |||||||||||   |||||||  | ||||||||||||||||||||||||| ||| || | ||||||||||| ||||| ||     
T  16221427 tgtccatttcttaatgagtaagaatatgagc--tgtccccctacgattggaatcctaggaagaataaaataatgtgtcagtgggtaggtatgattgaatg 16221330  T
Q  207 agcatggatgg--ataaggacaatccatgtaaaatgatcaaagggtacaacttgtagt-ggtggacttgtcctataaaagaatacccatgtgttagtgcc 303  Q
     |   ||  ||  |||||||||| ||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||||| | |||||||| ||||||||    
T  16221329 gggggggggggggataaggacaacccatgtaaaatgaccaaagggtacaacttttagtgggtggccttgtactataaaaggacacccatgttttagtgcc 16221230  T
Q  304 aagggtccgataattca 320  Q
    ||||||| || ||||||    
T  16221229 aagggtctgaaaattca 16221213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 372 - 459
Target Start/End: Complemental strand, 32202895 - 32202807
Alignment:
Q  372 ctcaccttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttag-tttctatgttttcattgatgtccatct 459  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||    
T  32202895 ctcaccttattcatttaaggattgtaatcttttgacaactctatctattctattaatatagttttctatgttttcatttatttccatct 32202807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 448
Target Start/End: Original strand, 33797722 - 33797790
Alignment:
Q  381 ttccttcaaggattgtaatcttgtgacaactctatctattctattaattta-gtttctatgttttcatt 448  Q
    |||||||||||||||||||||| |   |||||||| || ||||| ||||||  ||||||||||||||||    
T  33797722 ttccttcaaggattgtaatcttatactaactctatttaatctatcaatttacttttctatgttttcatt 33797790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 372 - 448
Target Start/End: Complemental strand, 15258466 - 15258389
Alignment:
Q  372 ctcaccttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttag-tttctatgttttcatt 448  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  15258466 ctcaccttattccttcaaagagtgtaatcttgtgacaactctatctattctattaatttagttttctatgctttcatt 15258389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 25233519 - 25233585
Alignment:
Q  245 aagggtacaacttgtagtggt-ggacttgtcctataaaagaatacccatgtgttagtgccaagggtc 310  Q
    ||||||||||||||||||||| || ||||| ||||||||| | | ||||||||||||||||||||||    
T  25233519 aagggtacaacttgtagtggttggccttgtactataaaaggacaaccatgtgttagtgccaagggtc 25233585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 30122647 - 30122598
Alignment:
Q  235 aaaatgatcaaagggtacaacttgtagtgg-tggacttgtcctataaaag 283  Q
    ||||||||| |||||||||||||||||||| ||| ||||| |||||||||    
T  30122647 aaaatgatcgaagggtacaacttgtagtggttggccttgtactataaaag 30122598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 376 - 459
Target Start/End: Complemental strand, 24884765 - 24884681
Alignment:
Q  376 ccttattccttcaaggattgtaatcttgtgacaactctatctattctattaatttagt-ttctatgttttcattgatgtccatct 459  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| | ||||| ||||||||| || |||||||    
T  24884765 ccttattccttcaaggattataatcttgtgacaactctatctattctattagtttaatattctacgttttcatttatttccatct 24884681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 20625837 - 20625916
Alignment:
Q  232 tgtaaaatgatcaaagggtacaacttgtagtggtgga-cttgtcctataaaagaatacccatgtgttagtgccaagggtc 310  Q
    |||||||| | ||||||||||||||||||||||| || ||||| ||||||||| | |  |||||||| ||||||| ||||    
T  20625837 tgtaaaataaacaaagggtacaacttgtagtggttgaccttgtactataaaaggacaatcatgtgtttgtgccaaaggtc 20625916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 382653 - 382801
Alignment:
Q  9 tgcagcgtggattgtagatgcatcgctgaagatgtggaaagttgcagcatcctgggactctagccaggccgtaaatagtacacatgcgtaggtccagttt 108  Q
    |||||| ||||||| ||||| ||| || ||||||||||||| |||| ||||||||||| |||||| || |||| |||| || |||  || |||||||| |    
T  382653 tgcagcatggattgaagatgtatcactaaagatgtggaaagctgcatcatcctgggacgctagccgggtcgtacatagcacgcatatgtgggtccagtct 382752  T
Q  109 gtccattgcttaatgaagaagaatatgagagatgtccccaatgattggaat 159  Q
    |||| ||  ||| ||| |||||||||  ||| |||||| ||||||||||||    
T  382753 gtcccttttttattgaggaagaatat--gagttgtccctaatgattggaat 382801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University