View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_97 (Length: 466)
Name: NF8981_low_97
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_97 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 25608393 - 25608081
Alignment:
| Q |
12 |
catcacaattgagaaactaatatttcaactatggaaacagggatatgaagaaaaagtggaccaattttatgaaattcatacttttctattgagaatcatg |
111 |
Q |
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| T |
25608393 |
catcacaattgagaaactaatatttcaa-tatggacacagggatattaagaaaaagtggactaattttatgaaatttatacttttctattgagaatcatg |
25608295 |
T |
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| Q |
112 |
aacacttgacaggtagaattttattaccagaactttttacctttttctacaacgaagcaaacatatccgtaaaagttgtcatgctacagaaatatcaaaa |
211 |
Q |
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| T |
25608294 |
aacacttgacaggtagaattttcttaccagaactccttacctttatccacaaagaagcaaacatgtccgtaaaagttgtcatgctacagaaatatcaaaa |
25608195 |
T |
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| Q |
212 |
taggcacattttttagcataaaaaacatacataaaaagatggctaaaagtgtgacagctaataggacagacatgcgccattttgacaaaaacttgaacct |
311 |
Q |
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| T |
25608194 |
tacacacatttttaagcataaaaaacatacataaaaggatggctaaaagtgtgacggaaaataggacagacatgcgccatttttctgtttacttgaacct |
25608095 |
T |
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| Q |
312 |
atcgataggtagca |
325 |
Q |
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| T |
25608094 |
atcgataggtagca |
25608081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 25607991 - 25607952
Alignment:
| Q |
408 |
ttaaaacaaagtcattttcaacaagttctgcaatcaccaa |
447 |
Q |
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| T |
25607991 |
ttaaaacaaagtcattttcaagaagttctgcaatcaccaa |
25607952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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