View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_98 (Length: 464)
Name: NF8981_low_98
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_98 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 29936437 - 29935991
Alignment:
| Q |
1 |
tcaagcttctctttcaacagtttctcaaccaccagaaatgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatgggtact |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29936437 |
tcaagcttctctttcaacagtttcttcaccaccagaagtgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatgggtact |
29936338 |
T |
|
| Q |
101 |
atagctgcagtgctgaatggagcaatactgcccacttttgggctcttgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29936337 |
atagctgcagtgctgaatggagcaataatgcccacttttgggctcttgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatg |
29936238 |
T |
|
| Q |
201 |
attcaaaagtttgggcaatggtatttgtagcggttggtgtggcatcattactggttattccatgtagatactacttttttggcattgctggaggtaagtt |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29936237 |
attcaaaagtttgggcaatggtgtttgtagcggttggtgtggcatcattactagttattccatgtagatactacttttttggcattgctggaggtaagtt |
29936138 |
T |
|
| Q |
301 |
gatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29936137 |
gatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaagg |
29936038 |
T |
|
| Q |
401 |
ctctccacagatgcagctttggttagagctctggttggggatgcact |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29936037 |
ctctccacagatgcagctttggttagagctctggttggggatgcact |
29935991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 28 - 444
Target Start/End: Original strand, 51146621 - 51147037
Alignment:
| Q |
28 |
accaccagaaatgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatgggtactatagctgcagtgctgaatggagcaata |
127 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
51146621 |
accaccagaagtgccactttatcgcctggcatattttaacaagcctgagattccagtcttattgatggggactataactgcagtgctgcatggagcaata |
51146720 |
T |
|
| Q |
128 |
ctgcccacttttgggctcttgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtatttg |
227 |
Q |
| |
|
||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
51146721 |
atgcccgttattgggctcttagtttctaaaatgataagtactttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatagtgtttg |
51146820 |
T |
|
| Q |
228 |
tagcggttggtgtggcatcattactggttattccatgtagatactacttttttggcattgctggaggtaagttgatccaaagaatccgaaaaatgtgttt |
327 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
51146821 |
tagcggttgctgtggcatcattactcattattccatgtagattctacttttttggcgttgctggaggtaagttgatccaaaggatccgaaaattgtgttt |
51146920 |
T |
|
| Q |
328 |
cgagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttaga |
427 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
51146921 |
tgagaaagtagttcacatggaagtaagttggtttgacgatgttgagcattcaagcggagcacttggagcaaggctctccactgatgcagcatcagttaga |
51147020 |
T |
|
| Q |
428 |
gctctggttggggatgc |
444 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
51147021 |
gctctagttggggatgc |
51147037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 51157733 - 51158179
Alignment:
| Q |
1 |
tcaagcttctctttcaacagtttctcaaccaccagaaatgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatgggtact |
100 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||| | | ||| |||| ||||| || |
|
|
| T |
51157733 |
tcaagcttctccttcgacagtttcttcaccaccggaagtgccactttatcgcctggcatattataacaagcctgagactgcggtcatattaatggggaca |
51157832 |
T |
|
| Q |
101 |
atagctgcagtgctgaatggagcaatactgcccacttttgggctcttgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatg |
200 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51157833 |
atagctgcagtgctgcaaggagcaataatgcccatttttgggctattgatttctaaaatgataaatattttctacaaaccagctcatgaacttcgtcatg |
51157932 |
T |
|
| Q |
201 |
attcaaaagtttgggcaatggtatttgtagcggttggtgtggcatcattactggttattccatgtagatactacttttttggcattgctggaggtaagtt |
300 |
Q |
| |
|
||||||||||||||||||| || ||||| || |||| ||||||| ||||||| ||||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
51157933 |
attcaaaagtttgggcaattgtgtttgtggccgttgctgtggcaacattactcattattccatgtagattctacttttttggtgttgctggtggtaagtt |
51158032 |
T |
|
| Q |
301 |
gatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaagg |
400 |
Q |
| |
|
||| ||||| ||||| || |||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51158033 |
gatacaaaggatccggaatatgtgttttgagaaagtagttcacatggaagtaagttggtttgatgaggctgagcattcaagcggagcacttggagcaagg |
51158132 |
T |
|
| Q |
401 |
ctctccacagatgcagctttggttagagctctggttggggatgcact |
447 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51158133 |
ctctccactgatgcagcttcagttagagctctggttggggatgcact |
51158179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 51200539 - 51200973
Alignment:
| Q |
13 |
ttcaacagtttctcaaccaccagaaatgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatgggtactatagctgcagtg |
112 |
Q |
| |
|
|||||| |||||| |||||||||| | ||||||||||||||||| ||||| |||||||| |||||| | |||||| | || || ||||||||||||||| |
|
|
| T |
51200539 |
ttcaacggtttcttcaccaccagaagttccactttatcgcctggcctatttaaacaagcccgagattcctgtcttacttataggaactatagctgcagtg |
51200638 |
T |
|
| Q |
113 |
ctgaatggagcaatactgcccacttttgggctcttgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagttt |
212 |
Q |
| |
|
|| |||| | |||| | || | |||||| |||||| |||| |||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
51200639 |
ttgcatggtgtaatattaccaatttttggcctcttgctttcgaaaatgattagtattttctacgagccagctgacgaacttcgtcacgattcaaaagttt |
51200738 |
T |
|
| Q |
213 |
gggcaatggtatttgtagcggttggtgtggcatcattactggttattccatgtagatactacttttttggcattgctggaggtaagttgatccaaagaat |
312 |
Q |
| |
|
|||| | |||||||| | | | | ||||||||| ||| | || |||||||||||| |||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
51200739 |
gggcgctagtatttgttgggctcgctgtggcatcgttattcatttttccatgtagattctacttttttggcattgctggaggtaagttgatcaaaaggat |
51200838 |
T |
|
| Q |
313 |
ccgaaaaatgtgtttcgagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagat |
412 |
Q |
| |
|
||| ||||||||||| ||||| |||||| | |||||||| | ||||||||||| | |||||||||||| || ||| |||||||||||||||| |||||| |
|
|
| T |
51200839 |
ccggaaaatgtgttttgagaaggtagttcatatggaagtgagctggtttgatgaagctgagcattcaagtggcgcaattggagcaaggctctctacagat |
51200938 |
T |
|
| Q |
413 |
gcagctttggttagagctctggttggggatgcact |
447 |
Q |
| |
|
||||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
51200939 |
gcagcttcagttcgagctttggttggtgatgcact |
51200973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 380
Target Start/End: Original strand, 34586206 - 34586306
Alignment:
| Q |
280 |
tggcattgctggaggtaagttgatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattca |
379 |
Q |
| |
|
||||||||||||||||||||||||| ||| || || ||||||||||| ||||| ||||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
34586206 |
tggcattgctggaggtaagttgatcagaaggattcggaaaatgtgttttgagaaggtagtttacatggaagtaagttggtttgttgaatctgagcattca |
34586305 |
T |
|
| Q |
380 |
a |
380 |
Q |
| |
|
| |
|
|
| T |
34586306 |
a |
34586306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 447
Target Start/End: Complemental strand, 49736150 - 49735974
Alignment:
| Q |
271 |
ctacttttttggcattgctggaggtaagttgatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatggaagtaaattggtttgatgaggtt |
370 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||| ||||| |||||| || |||||| || || ||||||||||| ||||||||| | | | |
|
|
| T |
49736150 |
ctacttttttgctgttgctggttctaagttgataaaaaggatccggttaatgtgctttgagaaaataattcacatggaagtaggatggtttgataaagct |
49736051 |
T |
|
| Q |
371 |
gagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagagctctggttggggatgcact |
447 |
Q |
| |
|
||| ||||||| || |||||||| |||||||| || || ||||| |||| | || || || |||||||||||||||| |
|
|
| T |
49736050 |
gagaattcaagtggtgcacttggtgcaaggctgtcaaccgatgctgcttcgattcgaactttggttggggatgcact |
49735974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University